genome.fa.s3222.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003222.1 Hibiscus syriacus cultivar Beakdansim tig00006786_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100737

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2554--2708	35	4.4	35	85	8	190	31	5	18	44	1.72
2554--2703	33	4.3	35	86	8	198	31	5	18	44	1.72
7154--7273	35	3.3	36	85	9	156	31	4	19	45	1.69
10527--10552	2	13.0	2	100	0	52	50	0	0	50	1.00
21633--21680	25	2.0	25	88	12	73	58	0	0	41	0.98
23568--23597	10	3.1	10	90	9	53	10	20	50	20	1.76
23568--23605	19	2.0	19	89	0	58	13	23	44	18	1.85
23592--23662	20	3.6	19	78	15	74	30	28	26	14	1.95
30782--30818	7	5.4	7	90	6	58	27	27	29	16	1.97
30786--30812	13	2.1	13	100	0	54	25	29	29	14	1.95
30830--30884	20	2.7	20	76	18	51	25	21	30	21	1.98
31795--31924	42	3.1	42	91	2	208	36	6	20	35	1.80
32138--32164	14	1.9	14	100	0	54	7	22	7	62	1.46
33571--33606	18	1.9	19	88	5	56	30	5	5	58	1.44
36736--36824	43	2.1	43	100	0	178	29	24	14	31	1.95
39710--39770	23	2.7	22	80	5	68	26	4	1	67	1.20
55747--55808	23	2.9	21	85	7	81	20	35	25	17	1.95
61233--61305	21	3.4	21	68	9	58	21	17	2	57	1.52
61210--61337	43	3.0	42	81	4	134	25	19	5	49	1.70
64122--64192	24	2.9	24	91	2	97	39	14	18	28	1.89
64137--64192	24	2.3	24	100	0	112	37	16	17	28	1.91
64788--64818	2	15.5	2	100	0	62	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65176--65209	17	2.1	16	88	5	50	14	20	5	58	1.57
70292--70366	28	2.6	30	80	4	91	28	12	4	56	1.54
84826--84874	12	4.1	12	83	0	62	24	2	2	71	1.07
84825--84874	18	2.8	18	81	0	55	26	2	2	70	1.09
85601--85632	14	2.3	15	89	10	50	87	3	6	3	0.73
91705--91938	45	5.2	45	94	2	368	37	8	23	30	1.84
91824--91895	24	3.2	24	62	34	59	38	8	22	30	1.83
92427--92474	20	2.4	20	82	0	60	22	22	12	41	1.88
92833--92894	31	2.2	28	83	13	74	29	29	22	19	1.98
94324--94351	2	14.0	2	100	0	56	50	0	0	50	1.00
94881--95261	192	2.0	192	97	0	726	37	4	20	37	1.73
96050--96123	18	3.9	18	88	10	112	17	24	31	27	1.97
96046--96123	39	2.0	39	97	0	147	17	24	29	28	1.98

Tables:   1

The End!