Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003223.1 Hibiscus syriacus cultivar Beakdansim tig00006787_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71684

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3476--3540
17
3.6
17
71
15
58
16
20
33
29
1.95
3454--3547
38
2.5
38
91
0
152
21
22
30
25
1.98
3455--3523
21
3.5
21
71
15
65
20
24
30
24
1.99
3641--3700
29
2.0
30
84
9
79
41
5
16
36
1.70
6286--6317
6
5.7
6
89
10
50
90
0
9
0
0.45
6286--6317
11
2.8
11
95
4
55
90
0
9
0
0.45
6284--6317
17
2.1
16
94
5
59
91
0
8
0
0.43
7819--7881
29
2.1
31
80
11
78
38
9
14
38
1.78
8831--8901
31
2.4
31
79
13
85
33
7
21
38
1.80
9885--9982
33
3.0
33
96
0
178
42
14
14
28
1.84
10134--10234
38
2.7
38
92
0
166
25
20
26
26
1.99
10332--10394
30
2.1
30
90
0
99
41
11
17
30
1.84
11362--11399
3
12.7
3
94
0
67
63
0
2
34
1.09
12501--12624
21
5.7
21
87
9
153
41
25
10
22
1.85
12497--12628
67
2.0
65
89
5
203
40
25
9
23
1.85
14865--15140
139
2.0
139
87
1
401
22
17
27
32
1.96
15318--15647
98
3.3
101
81
8
370
39
11
17
31
1.86
16640--16720
40
2.0
40
95
0
144
29
16
12
41
1.84
17857--17894
20
2.0
19
90
10
60
50
10
21
18
1.76
19475--19517
18
2.3
19
88
4
61
74
9
13
2
1.16
20412--20450
14
2.6
15
84
12
53
25
2
0
71
0.98
20766--20834
30
2.3
31
82
12
90
26
24
5
43
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21930--21988
17
3.4
17
88
2
91
16
47
22
13
1.82
22003--22149
29
5.2
29
86
4
203
33
6
21
39
1.78
28362--28391
2
15.0
2
100
0
60
50
0
0
50
1.00
30614--30650
2
18.5
2
94
0
65
48
0
0
51
1.00
31903--31952
19
2.7
19
87
3
66
60
8
0
32
1.26
33929--33997
30
2.2
30
82
15
86
36
4
17
42
1.69
33938--33997
29
2.0
30
90
6
95
35
5
16
43
1.70
34077--34132
21
2.7
21
94
0
94
23
33
17
25
1.96
34100--34250
20
7.7
19
77
14
96
24
33
17
24
1.97
34204--34243
12
3.7
12
75
25
52
20
37
17
25
1.94
36706--36913
65
3.2
63
80
10
224
31
24
18
25
1.98
37793--37826
16
2.1
16
88
0
50
55
8
29
5
1.54
37849--37887
21
1.9
20
84
5
51
58
17
12
10
1.61
42007--42035
14
2.1
14
100
0
58
27
27
13
31
1.94
49574--49644
35
2.0
35
83
5
90
47
1
1
49
1.18
50966--51000
14
2.5
14
95
0
61
48
0
0
51
1.00
50966--51013
14
3.4
14
88
5
53
50
0
2
47
1.12
51084--51141
19
3.1
19
92
0
98
46
8
20
24
1.78
52793--52830
18
2.2
17
90
4
58
63
5
10
21
1.46
53009--53056
6
7.5
6
77
13
51
14
4
2
79
0.98
56841--56920
34
2.3
36
86
4
110
31
1
23
43
1.62
58370--58414
13
3.5
13
75
25
51
20
4
15
60
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58560--58593
12
2.9
12
86
4
52
8
8
8
73
1.25
59197--59233
18
2.0
20
89
10
60
27
5
0
67
1.12
68233--68370
28
5.0
27
86
5
179
36
23
5
34
1.77
68419--68455
19
1.9
19
88
0
56
21
27
29
21
1.99

Tables:   1

The End!