genome.fa.s3225.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003225.1 Hibiscus syriacus cultivar Beakdansim tig00006791_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60455

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2511--2553	13	3.3	13	90	0	68	16	20	44	18	1.87
2572--2597	9	2.9	9	100	0	52	30	34	23	11	1.90
4019--4059	18	2.2	19	83	12	50	48	4	0	46	1.23
4097--4176	22	3.5	23	79	8	83	43	0	1	55	1.08
4131--4160	14	2.1	14	93	0	51	46	0	0	53	1.00
4621--4680	24	2.5	24	94	2	104	30	21	1	46	1.61
7311--7366	20	2.8	21	89	5	80	33	19	17	28	1.95
9406--9481	26	3.1	23	83	11	73	42	3	14	39	1.64
9436--9499	26	2.5	26	89	0	92	43	1	17	37	1.58
10169--10262	26	3.6	25	80	11	91	47	1	14	36	1.52
10355--10500	63	2.3	64	85	4	197	36	2	15	44	1.61
10760--10852	21	4.5	21	78	4	100	39	18	24	17	1.91
10760--10852	41	2.3	41	100	0	186	39	18	24	17	1.91
10779--10913	41	3.3	41	82	6	132	38	20	21	19	1.94
10841--10935	20	4.7	20	78	2	82	34	23	17	24	1.96
11123--11166	22	2.0	22	86	0	61	20	40	15	22	1.90
11397--11434	20	1.9	20	88	0	58	13	15	21	50	1.78
12745--12789	18	2.5	18	88	0	72	26	44	15	13	1.83
13273--13317	20	2.3	20	84	3	65	40	17	22	20	1.92
13317--13374	14	3.9	14	75	16	62	50	24	15	10	1.75
13305--13391	32	2.7	33	90	3	149	49	21	17	11	1.78
13408--13465	14	3.9	14	79	16	71	8	17	25	48	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13403--13471	32	2.1	33	97	2	131	8	18	23	49	1.75
13410--13479	32	2.2	32	92	2	113	11	18	22	47	1.81
15524--15573	14	3.2	14	75	24	55	48	20	20	12	1.80
15505--15582	33	2.4	33	88	0	111	43	21	21	12	1.86
15534--15570	19	1.9	19	88	0	56	51	16	21	10	1.74
15609--15676	19	3.5	19	89	2	100	17	20	26	35	1.95
16736--16789	24	2.2	24	90	0	81	24	16	20	38	1.92
16964--16988	12	2.1	12	100	0	50	72	0	28	0	0.86
19280--19429	19	8.7	19	70	20	132	43	19	22	14	1.87
19280--19404	33	3.8	33	88	4	198	43	19	22	15	1.88
19281--19404	66	1.9	66	98	0	239	42	19	22	15	1.88
19608--19644	14	2.6	14	91	0	65	45	24	0	29	1.53
21002--21068	21	3.2	21	68	4	55	19	20	35	23	1.95
21002--21124	42	2.9	41	80	7	113	22	17	36	22	1.95
23145--23243	33	3.0	33	89	1	144	39	26	23	11	1.88
23120--23285	20	9.1	19	74	16	136	43	22	22	12	1.86
23281--23360	18	4.5	18	76	17	78	11	17	25	46	1.81
23912--24012	20	4.9	21	71	12	59	18	19	18	42	1.89
23875--23968	20	4.7	20	80	2	89	23	18	24	34	1.96
23896--24030	41	3.3	41	82	4	139	19	21	20	38	1.94
23957--24049	20	4.6	20	78	4	96	17	24	18	39	1.91
23957--24049	41	2.3	41	100	0	186	17	24	18	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28588--28650	32	2.0	31	84	6	83	36	6	0	57	1.24
28693--28753	22	2.8	22	78	14	63	50	1	0	47	1.10
38220--38345	60	2.1	58	84	8	155	37	15	16	30	1.90
38860--39098	115	2.2	106	84	7	298	36	17	16	29	1.92
40371--40419	21	2.5	20	80	9	55	46	4	4	44	1.41
42276--42309	18	1.9	18	94	5	61	50	5	5	38	1.51
43521--43582	22	2.8	22	87	0	79	20	20	24	33	1.97
53971--54018	17	2.8	18	81	9	64	79	6	0	14	0.92
54097--54148	14	3.8	13	82	10	59	82	1	1	13	0.84
54095--54149	21	2.7	20	81	16	67	80	1	1	16	0.90
54095--54135	11	3.8	11	87	12	59	82	0	0	17	0.66
54097--54149	25	2.2	25	83	10	65	81	1	1	15	0.87
57218--57256	5	7.6	5	88	11	53	0	15	0	84	0.62
57218--57253	11	3.3	11	92	7	56	0	16	0	83	0.65
57218--57256	16	2.5	16	95	4	71	0	15	0	84	0.62

Tables:   1

The End!