genome.fa.s3227.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003227.1 Hibiscus syriacus cultivar Beakdansim tig00006794_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64240

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
321--360	17	2.4	17	95	4	73	50	5	0	45	1.23
8146--8337	20	9.6	20	94	1	323	35	14	32	17	1.90
8378--8431	22	2.5	22	79	5	67	29	14	22	33	1.94
8755--9361	54	11.3	54	87	1	761	29	18	19	32	1.96
12696--12746	20	2.5	20	96	0	93	39	13	21	25	1.90
13427--13485	30	2.0	30	96	0	109	38	6	22	32	1.80
28736--28766	16	1.9	16	93	0	53	25	19	12	41	1.87
28789--28826	16	2.4	16	82	13	51	28	21	7	42	1.81
29009--29055	14	3.7	14	71	26	50	44	0	4	51	1.21
29008--29057	23	2.1	24	96	3	93	48	0	4	48	1.20
29532--29600	30	2.3	30	84	0	102	37	27	31	2	1.72
29534--29591	10	5.8	10	83	0	80	39	29	29	1	1.67
29534--29589	20	2.8	20	88	0	94	41	28	28	1	1.66
31740--31787	13	3.7	13	91	0	78	27	18	18	35	1.95
31740--31794	26	2.1	26	93	0	92	27	20	16	36	1.93
31766--31930	85	1.9	85	81	7	201	31	20	18	30	1.96
33866--33906	15	2.7	15	96	0	73	43	12	9	34	1.75
34818--34851	17	2.0	17	94	0	59	47	0	20	32	1.51
35196--35257	2	31.0	2	100	0	124	50	0	0	50	1.00
35864--35893	16	1.9	15	93	6	51	56	0	40	3	1.16
36614--36871	120	2.2	120	94	0	453	50	20	9	19	1.75
37136--37200	6	10.8	6	86	0	94	3	15	44	36	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37136--37244	18	6.1	18	79	2	94	7	12	40	39	1.71
37223--37293	6	11.8	6	84	0	61	9	1	43	45	1.46
37139--37282	12	12.1	12	75	2	85	9	9	42	39	1.68
37222--37288	30	2.2	30	86	5	91	10	1	44	43	1.47
37681--37736	18	2.9	19	73	7	60	48	3	37	10	1.56
38010--38056	6	8.3	6	81	13	64	48	2	0	48	1.13
37982--38091	34	3.4	32	72	16	95	50	0	2	46	1.22
38004--38056	18	3.1	17	79	15	65	49	1	0	49	1.12
38072--38132	31	2.0	31	90	6	97	50	4	3	40	1.40
38078--38124	24	1.9	25	82	4	60	53	6	2	38	1.39
37979--38245	31	8.5	30	69	23	90	48	3	4	43	1.39
38127--38209	21	3.9	21	72	9	69	46	4	6	42	1.49
38267--38319	21	2.5	21	84	6	72	45	5	9	39	1.60
38362--38420	22	2.8	20	78	14	64	44	5	8	42	1.57
38359--38482	20	6.1	21	70	23	79	42	6	8	42	1.60
38362--38490	57	2.2	59	86	5	183	41	5	8	44	1.58
38531--38555	13	1.9	13	100	0	50	16	0	44	40	1.47
38645--38689	20	2.2	21	88	4	65	40	2	6	51	1.41
38680--38750	37	2.0	36	86	5	99	40	11	8	39	1.71
38946--39083	2	71.5	2	66	19	53	44	5	2	48	1.36
39040--39119	28	2.9	26	78	10	88	43	7	5	43	1.54
39102--39160	18	3.3	18	84	11	68	47	1	5	45	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38949--39185	13	17.4	13	66	20	71	44	5	2	47	1.40
45244--45290	19	2.4	19	92	3	76	44	12	17	25	1.84
45253--45772	193	2.7	193	81	5	541	40	13	16	29	1.86
52956--53015	21	2.9	21	97	2	113	36	10	10	43	1.72
52756--53216	221	2.1	221	84	4	592	39	13	11	35	1.81
52977--54740	200	9.1	199	76	11	1442	39	13	13	33	1.84
53270--53639	179	2.1	177	90	3	573	39	11	14	33	1.83
53450--54436	201	5.0	200	84	6	1148	39	13	13	33	1.84
54265--54614	177	2.0	178	87	2	508	36	14	16	32	1.89
52763--54681	976	1.9	986	84	5	2549	39	13	13	33	1.84
57994--58054	31	2.0	31	87	3	88	11	14	11	62	1.55
60860--60929	32	2.2	32	92	0	113	28	17	24	30	1.97
60998--61165	60	2.7	60	83	9	223	30	14	13	41	1.84
61213--61493	131	2.1	131	82	5	352	25	31	18	24	1.98
61758--61791	3	11.7	3	90	6	52	38	0	0	61	0.96

Tables:   1

The End!