genome.fa.s323.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000323.1 Hibiscus syriacus cultivar Beakdansim tig00000605_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106496

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3998--4069	20	3.5	20	90	1	108	37	22	15	25	1.93
4063--4169	20	5.4	20	80	9	105	43	23	15	16	1.87
4045--4168	40	3.1	40	77	10	130	42	22	16	17	1.89
4304--4341	16	2.5	15	84	12	51	28	5	0	65	1.14
4893--4926	12	2.8	12	90	0	50	55	29	0	14	1.40
5047--5093	24	2.0	24	95	0	85	27	21	17	34	1.95
17631--17693	23	3.0	21	81	6	74	23	34	25	15	1.95
18102--18131	15	1.9	16	93	6	53	26	3	10	60	1.45
25860--25911	15	3.4	15	78	17	54	59	7	15	17	1.58
27946--27981	18	2.0	18	94	0	63	55	25	2	16	1.55
28297--28341	20	2.2	20	88	0	72	17	20	24	37	1.93
28801--28837	18	2.1	18	89	0	56	32	5	10	51	1.60
28782--28845	24	2.6	25	76	9	71	37	4	9	48	1.56
29147--29233	39	2.2	39	95	4	158	47	19	14	18	1.83
29630--29666	14	2.6	14	95	0	65	45	21	2	29	1.65
31072--31147	21	3.6	21	75	7	82	19	21	34	25	1.96
31074--31170	42	2.3	42	78	7	106	23	17	34	24	1.96
33829--33977	20	7.4	20	90	0	226	17	17	24	40	1.90
33829--34013	60	3.1	60	84	4	232	17	17	24	40	1.91
33829--34013	40	4.6	41	84	7	215	17	17	24	40	1.91
47737--47783	22	2.1	22	84	7	60	38	2	4	55	1.31
48236--48277	13	3.3	13	75	18	52	61	4	0	33	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49781--49806	6	4.3	6	100	0	52	69	15	0	15	1.20
52417--52483	27	2.5	27	90	0	98	47	13	7	31	1.70
52876--52950	21	3.6	21	73	15	59	37	20	20	22	1.94
52918--53029	20	5.6	20	87	4	104	38	26	18	16	1.92
52918--53147	60	3.8	60	81	5	234	36	25	18	19	1.94
52956--53166	20	10.6	20	84	5	239	36	25	17	20	1.94
53859--53905	24	2.0	24	87	8	69	25	14	21	38	1.92
54080--54104	12	2.1	12	100	0	50	72	0	28	0	0.86
56391--56633	33	7.1	33	79	12	276	46	17	23	13	1.83
56401--56566	53	3.2	53	94	0	289	46	18	21	13	1.83
56391--56651	86	3.0	85	83	12	306	45	17	22	13	1.83
56526--56613	14	5.6	14	69	23	59	45	18	23	12	1.83
56628--56743	53	2.2	52	86	3	160	18	23	18	38	1.93
56666--56753	19	4.8	19	82	14	123	13	22	15	47	1.81
56844--56880	14	2.6	14	91	0	65	45	21	0	32	1.52
58719--58872	19	8.6	19	73	14	130	46	22	20	11	1.82
58737--58867	33	3.8	33	87	5	172	47	22	20	9	1.79
58736--58872	52	2.6	51	71	7	132	46	21	21	10	1.80
58862--58917	19	3.2	18	71	21	57	10	17	28	42	1.83
58867--58991	33	3.8	33	90	1	169	10	17	27	44	1.81
58868--58959	19	5.4	18	69	24	74	8	17	28	45	1.78
58917--58973	14	3.7	14	72	20	51	8	22	24	43	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59089--59402	93	3.4	93	98	0	596	44	19	14	21	1.85
61088--61194	19	5.7	20	77	15	104	46	18	23	11	1.81
61086--61150	21	3.1	21	82	4	96	47	15	26	10	1.78
61217--61290	21	3.5	21	80	7	96	14	20	17	47	1.83
61370--61440	33	2.2	33	94	0	124	47	16	23	11	1.79
61821--62012	20	9.6	20	86	4	253	19	19	27	34	1.96
62006--62052	21	2.2	21	100	0	94	31	19	21	27	1.97
64326--64379	20	2.7	20	77	8	56	44	0	0	55	0.99
72211--72362	6	25.3	6	100	0	304	17	0	32	50	1.46
78778--78854	38	2.0	38	94	0	136	48	10	15	25	1.77
84480--84506	14	1.9	14	100	0	54	14	14	33	37	1.88
94070--94126	22	2.5	23	81	13	73	10	10	75	3	1.16

Tables:   1

The End!