genome.fa.s3231.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003231.1 Hibiscus syriacus cultivar Beakdansim tig00006801_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64097

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
751--790	20	2.0	21	85	5	55	37	12	7	42	1.71
761--822	32	1.9	32	90	0	97	35	11	9	43	1.73
739--838	53	1.9	52	85	6	139	36	11	8	45	1.69
1588--1664	31	2.5	31	87	4	104	35	9	16	38	1.81
1588--1675	29	3.0	29	84	3	113	34	9	15	40	1.79
5103--5142	21	1.9	21	84	0	53	37	10	15	37	1.80
15628--15740	42	2.8	41	84	5	140	32	27	13	26	1.93
15627--15822	20	9.7	21	76	9	122	28	27	15	29	1.96
15751--15879	20	6.4	20	77	0	114	28	26	15	29	1.96
15749--15879	40	3.3	40	78	0	145	28	26	15	29	1.96
15726--15880	60	2.6	60	84	0	184	27	27	14	30	1.95
15898--15961	20	3.2	20	84	4	85	29	15	25	29	1.96
29373--29613	119	2.0	119	100	0	482	37	12	16	33	1.86
32232--32328	50	1.9	50	89	0	149	13	18	15	52	1.74
32270--32306	18	2.1	18	100	0	74	10	21	18	48	1.78
34294--34334	2	20.5	2	100	0	82	48	0	0	51	1.00
34736--35117	195	2.0	195	88	2	570	30	13	19	36	1.91
35554--35628	19	3.6	20	76	16	73	40	5	2	52	1.38
36998--37061	21	3.0	21	79	6	67	57	7	15	18	1.62
37425--37503	10	7.2	10	68	18	50	56	18	13	10	1.65
37404--37474	34	2.1	35	91	2	117	57	16	14	11	1.64
37432--37504	23	3.1	24	84	7	96	56	17	13	12	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46361--46477	60	2.0	60	84	3	155	33	19	5	41	1.74
47498--47528	15	2.1	15	93	0	53	16	6	35	41	1.74
49210--49271	30	2.1	30	87	0	88	29	14	8	48	1.72
50719--50774	4	14.0	4	96	0	103	73	0	26	0	0.84
52462--52853	102	3.8	100	88	4	507	25	34	13	25	1.93
52462--52853	204	1.9	204	86	1	561	25	34	13	25	1.93

Tables:   1

The End!