Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003232.1 Hibiscus syriacus cultivar Beakdansim tig00006802_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85660

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
989--1034
22
2.0
23
84
12
60
32
6
0
60
1.22
3261--3313
25
2.1
25
92
0
88
47
15
5
32
1.68
3377--3453
31
2.5
31
78
2
82
28
31
25
14
1.95
4354--4498
57
2.5
56
87
4
193
37
22
4
35
1.75
4356--4490
28
4.8
27
84
7
171
37
21
5
35
1.76
4356--4498
29
5.0
29
85
5
193
37
22
4
34
1.76
4548--4584
19
1.9
19
88
0
56
21
27
29
21
1.99
22210--22249
20
2.0
20
90
0
62
7
17
22
52
1.69
22183--22250
10
7.1
10
71
15
54
10
13
19
57
1.64
27143--27215
34
2.1
35
84
2
94
46
19
1
32
1.58
33485--33541
21
2.8
21
83
2
71
33
29
12
24
1.92
35299--35357
28
2.1
29
81
9
68
22
6
5
66
1.36
35337--35377
21
1.9
22
90
5
66
21
7
0
70
1.11
49109--49141
12
2.8
12
95
0
57
33
6
12
48
1.65
52342--52371
4
7.5
4
100
0
60
23
0
0
76
0.78
53037--53078
18
2.4
18
92
7
70
73
7
19
0
1.05
53037--53086
16
3.0
16
80
16
57
74
8
18
0
1.06
53938--54141
60
3.4
58
81
7
216
21
11
7
59
1.57
53938--54148
30
7.1
28
74
13
158
20
11
8
59
1.58
57369--57489
5
23.8
5
69
14
54
75
7
17
0
1.03
57360--57440
15
5.2
17
78
16
79
74
6
19
0
1.03
57366--57489
24
5.3
24
72
20
102
75
7
17
0
1.03
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57369--57441
15
4.7
15
85
8
94
76
5
17
0
0.97
57388--57440
16
3.2
16
92
7
81
77
5
16
0
0.96
57386--57471
18
5.1
17
77
16
81
75
8
16
0
1.03
57371--57485
12
9.8
12
67
25
61
75
7
16
0
1.02
58788--58866
38
2.1
38
90
0
122
29
16
18
35
1.93
58899--59024
42
3.0
41
85
1
153
25
23
23
28
1.99
58948--59022
20
3.7
20
76
3
78
26
26
20
26
1.99
59377--59733
67
5.4
67
82
5
411
28
22
13
36
1.92
59377--59733
133
2.7
133
85
3
461
28
22
13
36
1.92
59617--59878
36
7.4
36
76
12
236
25
20
14
39
1.90
60598--60641
16
2.6
18
85
7
65
72
9
18
0
1.10
61401--61533
60
2.2
60
87
0
185
19
14
7
58
1.59
61401--61552
30
5.1
30
77
7
139
19
12
8
59
1.58
63914--64312
38
10.6
37
77
13
125
44
2
7
46
1.43
64096--64323
75
3.0
75
89
8
333
47
2
4
44
1.38
64099--64324
38
5.9
38
89
6
359
46
2
4
45
1.38
65390--65456
32
2.2
30
81
5
71
20
7
5
65
1.39
67461--67507
21
2.2
21
88
0
67
38
10
44
6
1.65
68041--68077
18
2.0
18
89
5
56
35
0
16
48
1.46
68413--68536
45
2.8
45
80
12
132
25
20
25
28
1.99
68435--68521
23
3.8
23
72
17
83
26
21
24
27
1.99
68439--68536
21
4.4
23
74
14
73
27
20
23
28
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74356--74499
64
2.3
63
80
8
157
29
15
25
28
1.96
74888--74942
23
2.3
24
87
12
87
21
5
3
69
1.25
74898--74941
23
1.9
23
100
0
88
22
2
4
70
1.17
76526--76558
17
1.9
17
88
11
50
27
6
3
63
1.32
77645--77676
15
2.1
15
94
0
55
31
0
3
65
1.08
77852--77904
26
2.0
26
92
0
88
52
3
16
26
1.61
78604--78648
8
5.5
8
82
10
56
0
4
11
84
0.76
78604--78651
25
1.9
25
91
0
78
0
4
12
83
0.79
78604--78651
17
2.8
16
81
12
51
0
4
12
83
0.79
84893--84926
3
11.7
3
93
6
61
32
32
0
35
1.58

Tables:   1

The End!