genome.fa.s3233.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003233.1 Hibiscus syriacus cultivar Beakdansim tig00006803_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111031

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154--191	20	1.9	20	89	10	60	21	39	26	13	1.89
2423--2457	11	3.0	11	84	15	52	17	0	31	51	1.45
2419--2452	13	2.6	13	95	0	59	17	0	35	47	1.48
2444--2476	16	2.1	16	100	0	66	36	0	18	45	1.49
2577--2607	15	2.1	15	100	0	62	32	6	12	48	1.67
4563--4642	41	2.0	41	87	0	115	40	21	7	31	1.81
4587--4742	82	1.9	82	85	5	217	34	23	10	31	1.89
4609--4742	41	3.3	41	91	0	196	34	23	11	30	1.90
6457--6491	2	17.5	2	100	0	70	51	0	0	48	1.00
12816--12867	27	2.0	27	88	3	79	19	23	3	53	1.61
18194--18236	21	2.0	21	90	0	68	30	27	2	39	1.69
20814--20951	59	2.3	58	79	6	152	50	7	10	31	1.63
21149--21188	17	2.4	17	91	0	62	32	2	0	65	1.06
23992--24017	2	13.0	2	100	0	52	50	0	0	50	1.00
24396--24525	60	2.2	60	81	6	147	35	14	18	31	1.91
27472--27534	25	2.4	25	73	5	63	71	9	4	14	1.28
27493--27552	32	1.9	32	83	16	81	66	5	8	20	1.37
27701--27768	2	35.0	2	79	5	59	55	1	2	39	1.24
29923--29968	23	2.0	23	91	0	74	28	26	23	21	1.99
31662--31822	64	2.5	63	85	8	200	26	21	18	33	1.96
32638--32978	43	7.4	43	65	20	170	22	17	24	34	1.96
32681--32938	51	5.4	50	66	20	192	24	17	25	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32612--33300	105	7.0	95	93	2	868	23	17	24	33	1.96
34057--34098	21	2.0	21	86	9	59	0	28	2	69	1.01
34135--34181	24	1.9	25	91	4	78	0	21	0	78	0.75
34138--34184	13	3.5	13	88	2	67	0	19	0	80	0.70
34138--34185	14	3.5	14	82	5	62	0	18	0	81	0.70
43588--43630	19	2.2	19	87	4	59	74	0	6	18	1.04
44833--45062	2	118.5	2	75	10	174	51	2	3	42	1.31
44803--44911	20	5.3	20	85	8	62	55	0	1	41	1.16
44975--45008	9	3.9	9	96	3	61	47	0	0	52	1.00
44993--45096	50	2.1	50	80	10	115	58	0	6	33	1.31
48621--48731	56	2.0	56	87	0	159	36	8	9	45	1.65
49933--49971	17	2.4	17	95	4	71	51	5	0	43	1.24
50504--50819	158	2.0	156	98	1	614	23	22	31	22	1.98
55476--55542	24	2.8	24	95	0	116	32	17	28	20	1.96
64271--64346	36	2.1	36	97	0	143	43	14	10	31	1.79
68674--68703	15	2.0	15	100	0	60	13	46	26	13	1.80
69126--69201	36	2.1	36	97	0	143	43	14	10	31	1.79
74566--74595	2	15.0	2	100	0	60	50	0	0	50	1.00
82640--82664	13	1.9	13	100	0	50	48	8	12	32	1.69
85886--85929	18	2.4	18	82	14	54	25	2	56	15	1.51
86003--86165	48	3.5	47	77	8	145	15	10	52	22	1.73
86519--86570	21	2.5	21	93	0	86	38	7	11	42	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87878--87911	5	6.6	5	96	3	59	23	55	20	0	1.43
88408--88448	5	7.6	5	97	2	55	0	19	53	26	1.45
88411--88452	6	7.5	6	97	2	63	0	16	54	28	1.42
88542--88597	21	2.7	19	76	15	58	33	21	21	23	1.97
88629--88824	21	9.4	20	78	13	148	25	21	22	30	1.99
88622--88824	42	4.9	41	77	11	189	25	21	21	31	1.98
88629--88810	84	2.2	83	96	1	337	25	21	21	30	1.98
88687--88804	62	1.9	63	85	5	168	25	22	21	31	1.98
89422--89462	18	2.2	19	86	4	57	46	0	0	53	1.00
93493--93585	29	3.2	29	93	0	159	46	11	8	33	1.71
93649--93725	29	2.6	29	89	2	109	49	11	5	33	1.62
93785--93863	29	2.7	29	84	2	77	45	12	8	32	1.73
93529--93873	137	2.5	138	84	4	453	40	13	10	35	1.79
93806--93862	29	2.0	29	96	0	105	45	8	10	35	1.70
102087--102154	31	2.2	31	86	0	91	44	8	23	23	1.81
102243--102277	18	1.9	18	100	0	70	45	20	5	28	1.73
103067--103106	20	2.0	20	90	4	64	42	35	10	12	1.76
107315--107347	16	2.1	16	100	0	66	39	24	12	24	1.89
108788--108827	21	2.0	20	90	5	62	45	15	12	27	1.82
110334--110459	56	2.2	57	90	1	191	26	16	23	33	1.96
110498--110541	20	2.2	20	95	0	79	22	15	22	38	1.92

Tables:   1

The End!