genome.fa.s3234.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003234.1 Hibiscus syriacus cultivar Beakdansim tig00006806_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77029

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1529--1584	19	2.9	19	97	0	103	32	3	10	53	1.53
1673--2811	194	5.8	199	92	4	1885	36	15	14	33	1.88
1673--2811	393	2.9	391	93	4	1946	36	15	14	33	1.88
5118--5180	23	2.7	23	90	0	90	36	6	19	38	1.77
5118--5190	23	3.2	23	86	3	85	35	5	19	39	1.75
6179--6221	2	22.5	2	90	9	72	51	0	0	48	1.00
14954--14985	15	2.1	15	94	0	55	56	0	37	6	1.25
17541--17584	22	2.0	22	86	4	63	61	2	2	34	1.21
18082--18265	92	2.0	89	92	3	305	47	8	30	13	1.72
25478--25522	19	2.2	21	80	11	58	55	2	0	42	1.12
26568--26685	19	5.9	20	80	9	109	23	19	22	33	1.97
26587--26684	19	4.9	19	83	9	133	21	20	24	33	1.97
26549--26681	61	2.2	61	97	0	248	21	18	24	35	1.95
26587--26677	42	2.3	40	83	10	123	19	19	25	35	1.96
28990--29039	26	1.9	26	83	0	64	42	6	14	38	1.70
37753--37789	19	1.9	19	94	0	65	37	2	2	56	1.28
41389--41441	20	2.9	18	81	10	56	47	1	1	49	1.23
42400--42463	32	2.0	32	84	0	83	48	15	4	31	1.66
48899--49069	86	2.0	86	95	0	306	35	13	20	30	1.91
49797--49841	21	2.1	21	87	0	63	31	28	24	15	1.96
50419--50453	18	1.9	18	88	11	54	54	5	17	22	1.64
51347--51651	145	2.1	143	90	7	476	25	18	21	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51619--51663	23	2.0	23	90	0	72	22	26	26	24	2.00
53349--53399	16	3.2	15	79	17	50	70	0	25	3	1.04
53347--53396	26	1.9	26	91	0	82	70	0	26	4	1.05
56822--56873	14	3.8	14	80	12	54	48	0	5	46	1.26
58164--58189	3	8.7	3	100	0	52	0	30	0	69	0.89
65037--65097	3	20.0	3	83	6	70	59	0	0	40	0.98
74604--74639	18	2.0	18	89	10	56	58	5	13	22	1.56
76451--76491	21	2.0	21	100	0	82	29	34	4	31	1.79

Tables:   1

The End!