Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003235.1 Hibiscus syriacus cultivar Beakdansim tig00006807_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105403

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92--149
14
3.9
14
79
16
71
8
17
25
48
1.75
77--165
32
2.7
33
94
3
162
10
19
23
47
1.79
150--204
20
2.8
19
83
8
65
14
23
23
38
1.92
671--714
17
2.5
17
81
3
52
15
15
40
27
1.88
2289--2332
22
2.0
22
95
0
79
18
15
45
20
1.85
2500--2614
20
5.7
20
77
5
79
24
17
22
35
1.95
2603--2694
20
4.6
20
78
2
94
19
23
17
39
1.92
2603--2697
41
2.3
41
94
1
165
20
23
16
40
1.91
8713--8761
13
3.8
13
83
2
64
46
0
0
53
1.00
8710--8761
26
2.0
25
88
3
77
48
0
0
51
1.00
8744--8790
25
2.0
23
87
8
67
38
2
2
57
1.23
12896--12926
2
15.5
2
100
0
62
0
51
0
48
1.00
15727--15762
2
18.0
2
94
0
63
2
50
0
47
1.15
34529--34593
31
2.1
30
85
2
85
29
3
4
63
1.30
43220--43278
25
2.3
25
85
8
75
62
3
32
1
1.21
47078--47107
15
2.0
15
93
0
51
53
0
10
36
1.35
47600--47817
103
2.1
103
100
0
436
25
13
24
36
1.92
47834--47892
22
2.6
23
83
5
75
20
28
27
23
1.99
52478--52695
103
2.1
103
100
0
436
25
13
24
36
1.92
52707--52779
23
3.3
23
76
3
78
23
21
23
31
1.98
55506--55583
35
2.2
35
84
6
104
42
17
0
39
1.50
55579--55653
35
2.1
35
90
0
114
29
0
25
45
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55892--55929
20
1.9
20
94
0
67
36
10
31
21
1.87
56702--56739
19
2.0
20
85
15
53
5
34
0
60
1.19
57200--57242
21
2.0
21
86
0
59
30
27
25
16
1.97
57269--57306
20
1.9
20
88
0
58
23
34
31
10
1.89
57596--57635
14
2.7
15
80
3
55
42
12
12
32
1.80
57928--57972
23
2.0
23
86
0
63
20
26
26
26
1.99
63512--63556
19
2.3
20
81
14
58
8
33
0
57
1.30
64007--64049
21
2.0
21
86
0
59
30
27
25
16
1.97
64076--64113
20
1.9
20
88
0
58
23
34
31
10
1.89
64405--64444
14
2.7
15
80
3
55
42
12
12
32
1.80
67188--67225
12
2.8
13
88
11
51
36
7
0
55
1.29
67362--67407
2
23.0
2
100
0
92
50
0
0
50
1.00
67507--67575
23
3.0
23
91
0
102
27
26
24
21
1.99
69273--69332
30
2.0
30
93
6
104
33
6
16
43
1.74
69428--69499
37
2.0
37
88
2
110
25
31
27
15
1.95
69449--69477
15
1.9
15
100
0
58
27
27
27
17
1.97
69592--69634
21
2.0
21
95
0
77
23
20
27
27
1.99
69663--69702
20
1.9
22
90
10
66
37
40
10
12
1.77
72711--72769
30
2.0
30
93
6
102
35
3
16
44
1.65
72859--72902
21
2.1
21
95
0
79
22
40
25
11
1.87
73014--73056
21
2.0
21
90
0
68
25
20
25
27
1.99
73084--73123
20
1.9
22
90
10
66
37
40
10
12
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
73337--73406
34
2.1
34
86
5
99
31
14
31
22
1.94
76103--76137
2
17.5
2
100
0
70
48
0
0
51
1.00
89321--89355
14
2.6
14
90
4
54
37
0
0
62
0.95
89554--89623
30
2.3
30
80
0
86
42
14
11
31
1.81
96352--96408
19
2.7
22
81
13
75
36
1
0
61
1.07
96352--96430
41
1.9
41
82
10
99
39
2
1
56
1.21
104073--104101
2
14.5
2
100
0
58
48
0
0
51
1.00
105270--105368
49
2.1
46
85
10
130
38
15
10
36
1.81

Tables:   1

The End!