genome.fa.s3237.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003237.1 Hibiscus syriacus cultivar Beakdansim tig00006809_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82534

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3547--3753	30	6.9	30	82	3	204	36	18	24	20	1.95
3574--3751	60	3.0	59	84	2	230	35	17	24	21	1.95
3574--3753	90	2.0	90	89	2	272	35	18	24	21	1.95
3575--3784	90	2.3	90	84	5	257	35	18	25	20	1.95
5195--5244	25	2.0	25	88	7	75	14	26	8	52	1.68
5927--6023	48	2.0	48	86	4	133	19	19	12	48	1.80
8507--8533	2	13.5	2	100	0	54	51	0	0	48	1.00
11235--11276	17	2.4	18	84	11	61	64	14	0	21	1.29
12976--13033	21	2.8	21	83	0	71	27	0	22	50	1.50
15096--15135	21	1.9	21	85	10	55	65	17	12	5	1.44
21166--21203	2	19.0	2	100	0	76	50	0	0	50	1.00
22984--23034	12	4.3	12	76	18	54	31	0	1	66	1.03
23019--23099	14	6.2	14	69	21	59	41	0	1	56	1.07
22992--23098	12	8.7	12	71	19	78	40	0	1	57	1.09
23000--23151	63	2.4	64	90	4	229	40	0	2	56	1.13
23146--23207	19	3.3	19	78	15	58	37	1	0	61	1.06
31294--31675	100	3.8	102	84	2	459	35	14	10	40	1.79
31844--31895	20	2.6	20	100	0	104	40	0	9	50	1.35
31967--32193	77	2.9	77	83	5	244	35	17	9	37	1.83
32179--32281	40	2.6	40	87	3	136	35	17	12	33	1.88
32219--32390	77	2.2	77	81	0	209	34	16	11	36	1.85
33507--33563	23	2.5	22	83	8	69	45	17	19	17	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34613--34692	39	2.0	41	85	4	110	28	16	20	35	1.94
35693--35750	28	2.2	26	82	14	66	48	8	15	27	1.74
35892--35936	20	2.2	20	92	0	72	37	11	24	26	1.89
42328--42378	2	25.5	2	100	0	102	0	49	0	50	1.00
44460--44500	9	4.7	9	82	14	50	2	17	17	63	1.42
44461--44501	18	2.3	18	91	0	64	2	17	14	65	1.37
46849--46928	2	40.0	2	100	0	160	50	0	0	50	1.00
51895--51942	21	2.2	23	78	14	57	56	0	2	41	1.11
56545--56582	17	2.3	17	86	4	51	55	2	0	42	1.14
59562--59631	33	2.1	34	89	2	106	27	10	14	48	1.75
61741--61874	33	4.1	33	98	0	250	41	10	26	21	1.85
62161--62236	20	3.8	20	74	5	64	47	27	1	23	1.60
67290--67318	5	5.8	5	100	0	58	20	0	58	20	1.39
67612--67693	15	5.5	15	88	2	121	37	7	19	35	1.80
67612--67693	30	2.8	30	94	1	139	37	7	19	35	1.80
67607--67693	45	2.0	44	93	2	147	40	6	19	33	1.78
67676--67744	20	3.5	20	94	2	122	40	10	13	36	1.78
67851--67893	23	2.0	23	81	9	54	46	2	4	46	1.36
67899--67951	20	2.7	20	75	16	56	49	1	1	47	1.23
67908--67966	28	2.2	28	80	14	72	50	1	1	45	1.21
68000--68073	30	2.4	31	80	17	84	50	0	1	48	1.09
68024--68091	23	3.0	23	79	12	70	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67981--68067	25	3.5	24	68	20	63	49	1	1	48	1.16
67965--68084	51	2.3	50	77	18	129	49	0	1	48	1.17
68273--68392	42	2.9	42	98	0	231	44	19	20	15	1.87
69170--69195	2	13.0	2	100	0	52	50	0	0	50	1.00
70561--70602	21	2.0	20	86	4	57	40	7	14	38	1.73
74453--74494	17	2.5	17	100	0	84	40	28	19	11	1.87
75198--75239	21	2.0	20	86	4	57	40	7	14	38	1.73
76005--76032	2	14.0	2	100	0	56	50	0	0	50	1.00
76572--76624	21	2.5	21	100	0	106	37	11	15	35	1.83

Tables:   1

The End!