genome.fa.s3238.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003238.1 Hibiscus syriacus cultivar Beakdansim tig00006810_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120169

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2646--2734	42	2.1	41	82	10	101	29	19	15	35	1.93
10344--10397	26	2.1	26	96	0	99	22	12	29	35	1.91
11015--11063	21	2.4	20	75	3	53	28	18	24	28	1.98
16342--16394	28	1.9	27	84	3	70	28	13	16	41	1.86
16591--16741	70	2.2	69	89	5	232	42	20	8	28	1.81
29643--29805	45	3.6	45	91	5	267	31	20	7	39	1.81
43115--43184	36	2.0	35	86	13	99	67	12	1	18	1.30
53337--53385	19	2.5	20	81	18	59	30	14	10	44	1.78
53419--53524	50	2.1	50	96	0	203	43	5	9	41	1.61
62356--62478	21	5.7	21	75	11	122	23	9	23	43	1.83
62377--62456	23	3.6	23	78	13	94	25	10	22	42	1.84
62353--62477	44	2.8	44	91	0	196	24	8	24	42	1.83
64308--64387	17	5.0	16	70	20	51	71	2	2	23	1.11
64331--64372	13	3.2	14	83	12	54	71	0	2	26	0.98
64584--64615	2	16.5	2	93	6	57	53	0	0	46	1.00
64657--64706	10	4.8	10	83	9	64	70	0	0	30	0.88
65119--65211	37	2.5	37	85	0	114	29	13	15	41	1.85
65972--66530	106	5.3	106	82	3	655	23	18	22	35	1.96
65972--66544	206	2.8	206	83	4	688	24	18	22	35	1.96
66890--66969	37	2.2	37	86	0	106	41	12	16	30	1.85
67851--67911	24	2.5	24	94	0	104	40	1	19	37	1.62
73462--73505	22	2.0	22	86	4	63	75	0	2	22	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73714--73762	21	2.2	21	82	10	53	61	0	4	34	1.15
74234--74326	37	2.5	37	85	0	114	30	13	13	41	1.84
74917--74957	18	2.2	19	86	8	57	36	14	4	43	1.67
76678--76725	20	2.5	19	76	6	53	41	10	6	41	1.64
78867--78911	12	3.7	12	79	5	54	8	6	0	84	0.78
78879--78928	21	2.4	21	75	18	50	4	14	2	80	0.95
83358--84397	345	3.0	345	99	0	2073	28	19	15	36	1.93
91248--91387	67	2.1	66	93	2	244	24	24	12	38	1.90
98684--98731	20	2.5	19	83	6	62	37	14	6	41	1.71
98396--99122	244	2.9	243	92	4	1157	40	11	9	38	1.73
102339--102380	21	2.0	21	100	0	84	38	23	23	14	1.92
103587--103625	20	2.0	20	84	0	51	35	25	10	28	1.89
107665--107716	12	4.1	12	75	22	52	65	7	11	15	1.46

Tables:   1

The End!