Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003240.1 Hibiscus syriacus cultivar Beakdansim tig00006813_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70979

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2606--2634
3
9.7
3
100
0
58
68
0
0
31
0.89
4402--4442
16
2.5
17
84
7
59
36
2
0
60
1.10
4455--4491
17
2.2
17
86
13
51
54
0
8
37
1.30
4510--4541
17
1.9
17
93
6
57
34
0
0
65
0.93
6525--6587
21
3.0
20
71
13
56
31
1
3
63
1.19
9693--9741
24
2.0
24
96
0
89
24
10
12
53
1.69
11369--11408
6
6.5
6
97
2
71
32
0
32
35
1.58
32370--32402
2
16.5
2
100
0
66
51
0
0
48
1.00
36352--36413
30
2.1
30
93
0
106
22
11
24
41
1.86
36441--36966
261
2.0
264
97
1
1004
31
13
21
34
1.91
40004--40048
18
2.4
19
88
3
65
64
4
2
28
1.25
48044--48081
2
19.0
2
88
0
58
44
0
55
0
0.99
48515--48551
3
12.0
3
88
5
56
64
0
2
32
1.07
48504--48551
22
2.2
22
85
7
62
60
0
6
33
1.22
60764--60859
38
2.5
38
89
0
138
28
26
19
26
1.99
66671--66700
13
2.3
13
94
0
51
63
0
3
33
1.11
66854--66895
5
8.4
5
79
10
50
76
2
0
21
0.90
66953--67005
23
2.3
23
80
6
63
71
3
1
22
1.12
66955--67013
20
3.1
20
77
18
56
71
3
1
23
1.11
68220--68402
36
5.1
36
78
9
164
46
6
3
43
1.46
68238--68402
72
2.3
73
82
4
199
45
6
4
44
1.48
68453--68499
2
24.0
2
78
4
51
44
4
4
46
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68992--70457
84
17.8
83
79
6
1369
23
20
25
30
1.99
68992--70457
165
8.9
163
85
5
1435
23
20
25
30
1.99

Tables:   1

The End!