Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003241.1 Hibiscus syriacus cultivar Beakdansim tig00006815_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82241

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
638--774
54
2.5
54
93
0
238
29
13
19
37
1.90
2962--3038
21
3.8
21
87
3
113
20
23
24
31
1.98
7634--7680
21
2.2
22
84
3
60
46
0
0
53
1.00
14716--14767
26
2.0
27
84
3
70
42
7
5
44
1.57
14899--14996
29
3.3
29
81
5
117
47
11
7
33
1.66
33949--33973
3
8.3
3
100
0
50
36
64
0
0
0.94
34915--34946
11
2.8
12
86
13
50
62
6
31
0
1.20
35508--35562
21
2.7
21
82
2
67
34
29
14
21
1.93
35532--35622
20
4.5
20
83
5
112
39
20
18
20
1.93
35550--35641
40
2.3
42
83
11
129
42
20
16
20
1.89
35730--35775
20
2.3
20
96
0
83
54
28
0
17
1.43
35809--35859
22
2.3
22
82
0
66
19
41
21
17
1.91
36254--36300
20
2.3
20
92
0
76
19
21
23
36
1.95
36473--36523
25
2.0
25
100
0
102
49
0
11
39
1.40
38505--38530
2
13.0
2
100
0
52
50
0
0
50
1.00
38901--38932
16
2.0
16
93
0
55
40
6
25
28
1.79
40993--41108
40
2.9
40
97
0
214
29
12
14
43
1.81
41555--41593
19
2.0
20
85
14
55
35
0
0
64
0.94
47539--47595
20
2.9
20
89
2
89
28
19
29
22
1.98
52813--52850
19
2.0
20
89
5
60
39
18
5
36
1.73
52762--52926
66
2.4
65
81
8
168
43
12
13
30
1.81
52982--53198
102
2.1
102
83
5
271
37
10
15
35
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53724--53876
81
1.9
80
81
12
188
39
13
6
40
1.71
54034--54197
77
2.1
78
81
3
188
39
14
7
39
1.73
55956--56025
28
2.5
28
78
15
74
22
1
2
72
1.05
55901--56008
25
4.4
24
73
20
91
21
2
3
72
1.13
55955--56048
25
3.8
24
74
16
75
23
2
3
71
1.12
61275--62415
84
13.8
84
80
4
1067
31
23
19
25
1.98
61271--62408
332
3.4
331
87
2
1470
31
23
19
25
1.98
61275--62415
248
4.6
248
83
4
1296
31
23
19
25
1.98
64439--64464
13
2.0
13
100
0
52
38
7
46
7
1.61
72146--72193
2
24.0
2
100
0
96
50
0
0
50
1.00
76274--76353
3
27.7
3
70
20
55
23
1
2
72
1.04
76268--76366
8
11.8
8
77
15
85
22
2
3
72
1.08
76268--76366
17
5.9
16
75
16
85
22
2
3
72
1.08
76262--76381
41
2.8
43
79
15
133
24
1
3
70
1.11
79283--79313
13
2.4
13
100
0
62
32
25
29
12
1.93
79411--79441
9
3.4
9
90
0
53
16
9
0
74
1.07
79422--79487
34
1.9
34
81
9
80
18
7
4
69
1.29
80050--80092
9
4.4
9
85
11
50
16
4
0
79
0.90
80040--80086
19
2.2
23
85
14
66
12
6
2
78
1.02

Tables:   1

The End!