genome.fa.s3242.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003242.1 Hibiscus syriacus cultivar Beakdansim tig00006819_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  135796

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6355--6707	176	2.0	172	89	3	537	32	15	10	41	1.82
8856--8894	15	2.6	14	84	11	51	28	5	2	64	1.28
15033--15085	14	3.6	14	75	20	54	64	0	0	35	0.94
15025--15083	31	1.9	30	86	10	84	69	0	0	30	0.89
24880--24923	17	2.6	18	78	14	56	54	0	6	38	1.27
25796--25887	16	5.8	16	63	10	53	42	17	16	23	1.88
25781--25876	32	3.0	32	100	0	192	40	18	18	21	1.91
25940--26020	22	3.7	22	67	6	56	32	19	22	25	1.98
28443--28651	29	7.1	29	70	13	117	37	5	2	55	1.36
28523--28616	28	3.2	29	72	18	95	37	9	3	50	1.51
28494--28640	60	2.5	58	86	7	208	38	7	2	52	1.41
28663--28774	29	3.8	29	78	13	104	58	0	6	34	1.30
32076--32106	15	2.0	16	93	6	55	61	0	6	32	1.21
32312--32421	23	4.8	23	92	1	168	22	28	39	10	1.86
38352--38388	19	2.0	20	89	10	60	54	0	2	43	1.14
41712--41761	24	2.1	24	100	0	100	26	12	16	46	1.81
46055--46126	30	2.4	28	73	13	72	40	2	22	34	1.68
63318--63380	16	4.2	16	67	17	55	52	6	1	39	1.37
63328--63383	28	2.0	28	82	6	69	51	5	1	41	1.35
63321--63383	14	4.3	15	68	20	53	50	6	1	41	1.37
70494--70537	15	3.1	15	84	15	51	34	0	0	65	0.93
70498--70546	20	2.4	21	87	12	68	30	2	0	67	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71212--71271	25	2.6	23	77	15	61	20	3	1	75	1.04
71216--71274	30	2.0	30	90	6	93	20	5	1	72	1.12
72504--73573	151	7.1	151	99	0	2090	28	10	24	36	1.89
90072--90134	31	2.0	31	93	0	108	12	41	0	46	1.42
90819--90866	20	2.5	19	83	12	62	68	0	0	31	0.90
90823--90874	19	2.7	18	77	11	59	69	0	0	30	0.89
91884--92335	20	22.2	20	83	9	419	38	26	19	15	1.92
91884--92335	40	11.1	40	84	9	487	38	26	19	15	1.92
92431--92584	6	26.5	6	99	0	273	31	51	16	0	1.45
93083--93142	6	10.5	6	98	1	99	0	16	53	30	1.44
93139--93163	6	4.2	6	100	0	50	32	0	32	36	1.58
93264--93612	20	16.7	21	83	10	366	17	18	27	36	1.94
93256--93673	20	20.3	19	81	11	336	16	18	26	38	1.92
93256--93673	42	10.1	41	82	10	389	16	18	26	38	1.92
93256--93674	62	6.8	61	83	8	410	16	18	26	38	1.92
96183--96210	2	14.0	2	100	0	56	50	0	0	50	1.00
97047--97123	37	2.1	37	100	0	154	25	19	10	44	1.83
97713--97819	33	3.2	34	78	14	89	34	0	3	61	1.14
97744--97820	33	2.4	33	85	10	97	38	0	1	59	1.06
97744--97818	30	2.5	30	82	6	80	38	0	1	60	1.06
97960--98013	17	3.2	17	72	0	54	31	0	3	64	1.11
100156--100252	34	2.9	34	88	0	140	54	4	4	37	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100652--101278	128	4.9	127	94	1	1053	33	19	23	22	1.97
101352--101390	8	5.0	8	81	6	53	38	28	0	33	1.57
105430--105499	14	5.3	14	83	13	94	11	12	22	52	1.71
105430--105519	24	3.6	24	84	6	108	13	12	20	54	1.70
105431--105520	38	2.4	37	81	7	101	13	11	20	55	1.68
106031--106061	16	1.9	16	100	0	62	6	12	22	58	1.58
106445--106620	89	2.0	89	95	4	318	46	12	10	30	1.76
108145--108217	28	2.6	29	76	10	78	50	16	6	26	1.70
109963--109996	18	1.9	18	88	5	52	47	23	14	14	1.82
112032--112071	2	20.0	2	100	0	80	50	0	0	50	1.00
117671--117729	28	2.2	26	82	8	66	42	3	3	50	1.35
119496--119554	30	2.0	30	93	0	100	54	10	10	25	1.65
122921--122945	2	12.5	2	100	0	50	52	0	0	48	1.00
126813--126871	24	2.5	24	100	0	118	20	27	25	27	1.99
130686--130807	24	5.1	24	94	2	210	4	20	33	40	1.74
135685--135709	10	2.5	10	100	0	50	92	0	8	0	0.40

Tables:   1

The End!