Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003244.1 Hibiscus syriacus cultivar Beakdansim tig00006821_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84644

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9085--9132
21
2.4
20
83
10
62
45
18
4
31
1.68
9090--9134
21
2.1
21
91
0
72
40
20
4
35
1.72
15376--15409
2
17.0
2
100
0
68
50
0
0
50
1.00
18014--18051
17
2.2
18
95
4
69
44
0
21
34
1.52
21234--21290
20
2.8
20
97
0
105
36
15
22
24
1.94
21274--21387
20
5.7
20
79
4
122
26
26
21
25
2.00
21289--21387
40
2.5
39
86
3
135
25
27
21
26
1.99
21562--21604
22
2.0
22
95
0
77
23
41
16
18
1.89
21981--22055
20
3.8
20
70
8
64
16
14
22
46
1.83
23498--23553
24
2.3
24
93
0
94
39
19
16
25
1.91
24372--24477
20
5.3
20
91
1
142
26
20
29
23
1.99
24425--24520
20
4.8
20
86
0
93
27
18
21
32
1.97
30796--30863
34
2.0
34
94
0
118
32
16
27
23
1.96
31599--31682
36
2.3
35
76
9
89
23
10
33
32
1.89
32642--33027
185
2.1
182
91
3
616
45
8
2
44
1.47
32984--33043
26
2.3
25
80
8
66
46
0
3
50
1.18
36450--36621
59
2.9
59
91
1
272
37
20
13
29
1.90
37477--37594
59
2.0
58
85
1
155
35
16
16
31
1.91
40061--40142
42
2.0
42
80
9
96
26
34
10
28
1.90
44022--44165
78
1.8
78
83
2
191
41
9
16
32
1.80
45935--45995
25
2.6
23
82
14
79
70
0
3
26
1.02
47225--47895
105
6.4
105
94
0
1128
22
18
26
33
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48724--48772
8
5.6
8
82
17
62
0
0
12
87
0.54
48730--48755
11
2.4
11
100
0
52
0
0
7
92
0.39
48724--48762
19
2.1
19
100
0
78
0
0
10
89
0.48
48727--48772
19
2.5
19
89
6
69
0
0
13
86
0.56
58196--58229
10
3.4
10
87
0
50
73
0
5
20
1.04
59471--59531
25
2.6
23
82
14
79
70
0
3
26
1.02
75636--76027
102
3.8
102
87
3
511
25
13
34
25
1.93
77707--77761
4
14.0
4
96
3
103
0
25
0
74
0.82
79204--79265
30
2.1
30
87
0
88
48
8
14
29
1.72
80935--80965
15
2.1
15
93
0
53
41
35
6
16
1.74
81972--82088
60
2.0
60
84
3
155
41
5
19
33
1.74

Tables:   1

The End!