Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003245.1 Hibiscus syriacus cultivar Beakdansim tig00006822_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 69707
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Found at i:3172 original size:6 final size:6
Alignment explanation
Indices: 3161--3200 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
3151 TCTGACAAAA
* * *
3161 AGAATC AGAATC AGAATC AGAAGC AGAAGC AGAAGC AGAA
1 AGAAGC AGAAGC AGAAGC AGAAGC AGAAGC AGAAGC AGAA
3201 CAAGCAAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.53, C:0.15, G:0.25, T:0.07
Consensus pattern (6 bp):
AGAAGC
Found at i:3178 original size:12 final size:12
Alignment explanation
Indices: 3161--3200 Score: 62
Period size: 12 Copynumber: 3.3 Consensus size: 12
3151 TCTGACAAAA
*
3161 AGAATCAGAATC
1 AGAATCAGAAGC
3173 AGAATCAGAAGC
1 AGAATCAGAAGC
*
3185 AGAAGCAGAAGC
1 AGAATCAGAAGC
3197 AGAA
1 AGAA
3201 CAAGCAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.53, C:0.15, G:0.25, T:0.07
Consensus pattern (12 bp):
AGAATCAGAAGC
Found at i:16317 original size:265 final size:266
Alignment explanation
Indices: 15838--16372 Score: 792
Period size: 265 Copynumber: 2.0 Consensus size: 266
15828 CCATGGTGGT
* *
15838 AAAAAGTTGCTCGAAAAGCTAAAAGTTAAAGTGGAGAGGGATATCAAAGTCAAAGTTCAGAATTG
1 AAAAAGTTGCTCGAAAAGCTAAAAGTCAAAGTGGAGAGGGAGATCAAAGTCAAAGTTCAGAATTG
* *
15903 GGAAAGATGAGTGTGCCATTTTTTATGAGAAATGCCATTGAAAGAAGGAATGTCCAAAGCTGAAA
66 GGAAAGATGAGTGTGCCATTTTTTATCAGAAATGCCATTGAAAGAAAGAATGTCCAAAGCTGAAA
* * * *
15968 AATGAAAGAAAAAGTTGCTCTAGATATATGTCTTGCAGAGCATGATACTAGTGACTCTAAAATAT
131 AAGGAAAGAAAAAGTTGCTCCAAATACATGTCTTGCAGAGCATGATACTAGTGACTCTAAAATAT
* * ** * *
16033 CAATGGTTGCTTCACCATTATCATTTCATTCAGATGAATGGATATTAGATATGATTTGATGATAA
196 CAATGGTTACTTCACCATTACCATTTCATTCAGAAAAATGGATATTAGACATGAGTTGATGATAA
16098 CTCTCC
261 CTCTCC
16104 AAAAGAGTTGCTCGAAAAG-TCAAAAGTCAAAGTGGAGAGGGAGATCAAAGTCAAAGTTCA-AAC
1 AAAA-AGTTGCTCGAAAAGCT-AAAAGTCAAAGTGGAGAGGGAGATCAAAGTCAAAGTTCAGAA-
* * *
16167 TT-GGAAAGATGAGTGTGCCA-TTTTTATCATAATTGCCATTGAAAGAAAGAATGTTCTAAAGCT
63 TTGGGAAAGATGAGTGTGCCATTTTTTATCAGAAATGCCATTGAAAGAAAGAATG-TCCAAAGCT
* *
16230 G-AAAAGGAAAGGAAAAGTTGTTCCAAATACATGTCTTGCAGAGCATGATACTAGTGACTCTAAA
127 GAAAAAGGAAAGAAAAAGTTGCTCCAAATACATGTCTTGCAGAGCATGATACTAGTGACTCTAAA
* * *
16294 ATATCAATGGTTACTTCACCATTACCATTTCATTCAGAAAAATGGATATTGGACCTGAGTTGCTG
192 ATATCAATGGTTACTTCACCATTACCATTTCATTCAGAAAAATGGATATTAGACATGAGTTGATG
*
16359 ATAATTCTCC
257 ATAACTCTCC
16369 AAAA
1 AAAA
16373 CAATTATCTT
Statistics
Matches: 242, Mismatches: 23, Indels: 9
0.88 0.08 0.03
Matches are distributed among these distances:
265 155 0.64
266 34 0.14
267 53 0.22
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.28
Consensus pattern (266 bp):
AAAAAGTTGCTCGAAAAGCTAAAAGTCAAAGTGGAGAGGGAGATCAAAGTCAAAGTTCAGAATTG
GGAAAGATGAGTGTGCCATTTTTTATCAGAAATGCCATTGAAAGAAAGAATGTCCAAAGCTGAAA
AAGGAAAGAAAAAGTTGCTCCAAATACATGTCTTGCAGAGCATGATACTAGTGACTCTAAAATAT
CAATGGTTACTTCACCATTACCATTTCATTCAGAAAAATGGATATTAGACATGAGTTGATGATAA
CTCTCC
Found at i:22785 original size:83 final size:82
Alignment explanation
Indices: 22671--22949 Score: 294
Period size: 83 Copynumber: 3.4 Consensus size: 82
22661 ATATTTTAGC
* * * * * *
22671 GGCGTTTTTTAAACAAACGCCGTAATTGAGTGGTAATTTCGCGGCGTTTATAGCTA-AAACGCCG
1 GGCGTTTGTTCAACAAACGCAGCAATAGAGTGGTAATTTAGCGGCGTTTATA-C-ACAAACGCCG
22735 CAATAG-ATATGTTTATAGT
64 CAATAGTAT-TGTTTATAGT
* * * **
22754 GGCATTTTTTCAACAAACGCAGCAATAGAGTGGTAATTTAGCGGCGTTTTTACACAAACGCCGTG
1 GGCGTTTGTTCAACAAACGCAGCAATAGAGTGGTAATTTAGCGGCGTTTATACACAAACGCCGCA
22819 ATAGTATTGTTTATAGT
66 ATAGTATTGTTTATAGT
* * ** * * *
22836 GGCGTTTGTTCAATAAACG-ACGCTATAGAGAAGTAATTTAGCGGCGTTTATCCAATAAACGTCG
1 GGCGTTTGTTCAACAAACGCA-GCAATAGAGTGGTAATTTAGCGGCGTTTATAC-ACAAACGCCG
*
22900 CAATATTATTGTTTATAGT
64 CAATAGTATTGTTTATAGT
* * *
22919 GGCGTTTGTGCAAAAAACGCCGCAATAGAGT
1 GGCGTTTGTTCAACAAACGCAGCAATAGAGT
22950 AATAATATAG
Statistics
Matches: 164, Mismatches: 27, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
81 2 0.01
82 66 0.40
83 96 0.59
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.32
Consensus pattern (82 bp):
GGCGTTTGTTCAACAAACGCAGCAATAGAGTGGTAATTTAGCGGCGTTTATACACAAACGCCGCA
ATAGTATTGTTTATAGT
Found at i:22804 original size:41 final size:40
Alignment explanation
Indices: 22665--22816 Score: 121
Period size: 41 Copynumber: 3.6 Consensus size: 40
22655 AAAATGATAT
* *
22665 TTTAGCGGCGTTTTTTAAACAAACGCCGTAATTGAGTGGTAA
1 TTTAGCGGCG-TTTTT-AACAAACGCCGCAATAGAGTGGTAA
* * * *
22707 TTTCGCGGCGTTTATAGCTAAAACGCCGCAATAGA-TATGT--
1 TTTAGCGGCGTTTTTAAC--AAACGCCGCAATAGAGT-GGTAA
* * *
22747 TTATAGTGGCATTTTTTCAACAAACGCAGCAATAGAGTGGTAA
1 TT-TAGCGGC-GTTTTT-AACAAACGCCGCAATAGAGTGGTAA
22790 TTTAGCGGCGTTTTTACACAAACGCCG
1 TTTAGCGGCGTTTTTA-ACAAACGCCG
22817 TGATAGTATT
Statistics
Matches: 84, Mismatches: 16, Indels: 21
0.69 0.13 0.17
Matches are distributed among these distances:
40 5 0.06
41 40 0.48
42 35 0.42
43 4 0.05
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (40 bp):
TTTAGCGGCGTTTTTAACAAACGCCGCAATAGAGTGGTAA
Found at i:22854 original size:41 final size:40
Alignment explanation
Indices: 22809--22940 Score: 97
Period size: 41 Copynumber: 3.2 Consensus size: 40
22799 GTTTTTACAC
*
22809 AAACGCCGTGATAGTATTGTTTATAGTGGCGTTTGTTCAAT
1 AAACGCCGT-ATAGTATTGTTTATAGTGGCGTTTGTCCAAT
* ** * *
22850 AAACGACGCTATAG-AGAAGTAATT-TAGCGGCGTTTATCCAAT
1 AAACGCCG-TATAGTA-TTGT--TTATAGTGGCGTTTGTCCAAT
* * * * *
22892 AAACGTCGCAATATTATTGTTTATAGTGGCGTTTGTGCAAA
1 AAACGCCG-TATAGTATTGTTTATAGTGGCGTTTGTCCAAT
22933 AAACGCCG
1 AAACGCCG
22941 CAATAGAGTA
Statistics
Matches: 69, Mismatches: 16, Indels: 12
0.71 0.16 0.12
Matches are distributed among these distances:
40 3 0.04
41 34 0.49
42 29 0.42
43 3 0.04
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (40 bp):
AAACGCCGTATAGTATTGTTTATAGTGGCGTTTGTCCAAT
Found at i:22988 original size:83 final size:81
Alignment explanation
Indices: 22671--23007 Score: 266
Period size: 83 Copynumber: 4.1 Consensus size: 81
22661 ATATTTTAGC
* * * ** * *
22671 GGCGTTT-TTTAAACAAACGCCGTAATTGAGTGGTAATTTCGCGGCGTTTATAGCTA-AAACGCC
1 GGCGTTTGTTCAAA-AAACGCCGCAATAGAGTAATAATTTAGCGGCGTTTAT--CCACAAACGCC
* *
22734 GCAATAGATATGTTTATAGT
63 GTAATATAT-TGTTTATAGT
* * * * ** * * *
22754 GGCATTTTTTCAACAAACGCAGCAATAGAGTGGTAATTTAGCGGCGTTTTTACACAAACGCCGTG
1 GGCGTTTGTTCAAAAAACGCCGCAATAGAGTAATAATTTAGCGGCGTTTATCCACAAACGCCGTA
22819 ATAGTATTGTTTATAGT
66 ATA-TATTGTTTATAGT
* * * * *
22836 GGCGTTTGTTCAATAAACGACGCTATAGAG-AAGTAATTTAGCGGCGTTTATCCAATAAACGTCG
1 GGCGTTTGTTCAAAAAACGCCGCAATAGAGTAA-TAATTTAGCGGCGTTTATCC-ACAAACGCCG
*
22900 CAATATTATTGTTTATAGT
64 TAATA-TATTGTTTATAGT
* * * * * * *
22919 GGCGTTTGTGCAAAAAACGCCGCAATAGAGTAATAATATAGTGACATTTGTCCTACAAACACCGT
1 GGCGTTTGTTCAAAAAACGCCGCAATAGAGTAATAATTTAGCGGCGTTTATCC-ACAAACGCCGT
** *
22984 AATATGCTGTTTATCGT
65 AATATATTGTTTATAGT
23001 GGCGTTT
1 GGCGTTT
23008 ATATAAAAAT
Statistics
Matches: 203, Mismatches: 45, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
81 1 0.00
82 80 0.39
83 116 0.57
84 6 0.03
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (81 bp):
GGCGTTTGTTCAAAAAACGCCGCAATAGAGTAATAATTTAGCGGCGTTTATCCACAAACGCCGTA
ATATATTGTTTATAGT
Found at i:22997 original size:165 final size:165
Alignment explanation
Indices: 22703--23007 Score: 355
Period size: 165 Copynumber: 1.8 Consensus size: 165
22693 TAATTGAGTG
* * * * * *
22703 GTAATTTCGCGGCGTTTATAGCTAAAACGCCGCAATAGATATGTTTATAGTGGCATTTTTTCAAC
1 GTAATTTAGCGGCGTTTATACCAAAAACGCCGCAATAGATATGTTTATAGTGGCATTTGTGCAAA
** * * * * * * *
22768 AAACGCAGCAATAGAGTGGTAATTTAGCGGCGTTTTTACACAAACGCCGTGATAGTATTGTTTAT
66 AAACGCAGCAATAGAGTAATAATATAGCGACATTTGTACACAAACACCGTAATAGTACTGTTTAT
22833 AGTGGCGTTTGTTCAATAAACGACGCTATAGAGAA
131 AGTGGCGTTTGTTCAATAAACGACGCTATAGAGAA
* * *
22868 GTAATTTAGCGGCGTTTAT-CCAATAAACGTCGCAATA-TTATTGTTTATAGTGGCGTTTGTGCA
1 GTAATTTAGCGGCGTTTATACCAA-AAACGCCGCAATAGATA-TGTTTATAGTGGCATTTGTGCA
* * * *
22931 AAAAACGCCGCAATAGAGTAATAATATAGTGACATTTGTCCTACAAACACCGTAATA-TGCTGTT
64 AAAAACGCAGCAATAGAGTAATAATATAGCGACATTTGTAC-ACAAACACCGTAATAGTACTGTT
*
22995 TATCGTGGCGTTT
128 TATAGTGGCGTTT
23008 ATATAAAAAT
Statistics
Matches: 114, Mismatches: 23, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
164 4 0.04
165 97 0.85
166 13 0.11
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.32
Consensus pattern (165 bp):
GTAATTTAGCGGCGTTTATACCAAAAACGCCGCAATAGATATGTTTATAGTGGCATTTGTGCAAA
AAACGCAGCAATAGAGTAATAATATAGCGACATTTGTACACAAACACCGTAATAGTACTGTTTAT
AGTGGCGTTTGTTCAATAAACGACGCTATAGAGAA
Found at i:27784 original size:26 final size:26
Alignment explanation
Indices: 27753--27844 Score: 184
Period size: 26 Copynumber: 3.5 Consensus size: 26
27743 GCATGGTCTT
27753 GTGCATCGATGCATCAAATGCACTGA
1 GTGCATCGATGCATCAAATGCACTGA
27779 GTGCATCGATGCATCAAATGCACTGA
1 GTGCATCGATGCATCAAATGCACTGA
27805 GTGCATCGATGCATCAAATGCACTGA
1 GTGCATCGATGCATCAAATGCACTGA
27831 GTGCATCGATGCAT
1 GTGCATCGATGCAT
27845 GGTATGTGCA
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 66 1.00
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24
Consensus pattern (26 bp):
GTGCATCGATGCATCAAATGCACTGA
Found at i:29035 original size:88 final size:88
Alignment explanation
Indices: 28885--29048 Score: 204
Period size: 88 Copynumber: 1.9 Consensus size: 88
28875 CTTTTAGCAG
* * *
28885 CATTTGTATACTAAAAATGCCGCTATATACCAGGAATATAGCGGCGTGTTTAGGATACAAACGCC
1 CATTTGTATACTAAAAACGCCGCTATATACCAGGAATATAGCGGCGTGTTTAGCATAAAAACGCC
* *
28950 GCTATATACCAGTCCTATCGCGA
66 ACTAAATACCAGTCCTATCGCGA
* ** ** * *
28973 CATTTGTATCCTAAAAACGCCGCTATATACCAGTCATATCTCGGCGT-TTGTATCCTAAAAACGC
1 CATTTGTATACTAAAAACGCCGCTATATACCAGGAATATAGCGGCGTGTT-TAGCATAAAAACGC
29037 CACTAAATACCA
65 CACTAAATACCA
29049 TACATATTGC
Statistics
Matches: 63, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
87 2 0.03
88 61 0.97
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (88 bp):
CATTTGTATACTAAAAACGCCGCTATATACCAGGAATATAGCGGCGTGTTTAGCATAAAAACGCC
ACTAAATACCAGTCCTATCGCGA
Found at i:29065 original size:44 final size:44
Alignment explanation
Indices: 28887--29065 Score: 166
Period size: 44 Copynumber: 4.1 Consensus size: 44
28877 TTTAGCAGCA
* * ** * *
28887 TTTGTATACTAAAAATGCCGCTATATACCAGGAATATAGCGGCG
1 TTTGTATCCTAAAAACGCCGCTATATACCAGTCATATTGCGACG
*** * * * *
28931 TGTT-TAGGATACAAACGCCGCTATATACCAGTCCTATCGCGACA
1 T-TTGTATCCTAAAAACGCCGCTATATACCAGTCATATTGCGACG
*
28975 TTTGTATCCTAAAAACGCCGCTATATACCAGTCATATCT-CGGCG
1 TTTGTATCCTAAAAACGCCGCTATATACCAGTCATAT-TGCGACG
* *
29019 TTTGTATCCTAAAAACGCCACTAAATACCA-TACATATTGCGACG
1 TTTGTATCCTAAAAACGCCGCTATATACCAGT-CATATTGCGACG
29063 TTT
1 TTT
29066 TCATAAAAAA
Statistics
Matches: 108, Mismatches: 22, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
43 4 0.04
44 102 0.94
45 2 0.02
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.28
Consensus pattern (44 bp):
TTTGTATCCTAAAAACGCCGCTATATACCAGTCATATTGCGACG
Found at i:32332 original size:30 final size:30
Alignment explanation
Indices: 32298--32384 Score: 73
Period size: 23 Copynumber: 3.2 Consensus size: 30
32288 AACTGATCTT
32298 AAATTTATTTAATATTTTATATTAATCCTC
1 AAATTTATTTAATATTTTATATTAATCCTC
* * *
32328 AAA-TTATTT--TA---AAT-TTGATCTTC
1 AAATTTATTTAATATTTTATATTAATCCTC
* *
32351 -AATTTCTTTAATATTTTATATTAGTCCTC
1 AAATTTATTTAATATTTTATATTAATCCTC
32380 AAATT
1 AAATT
32385 ATGATTTTAT
Statistics
Matches: 41, Mismatches: 8, Indels: 16
0.63 0.12 0.25
Matches are distributed among these distances:
22 2 0.05
23 12 0.29
24 2 0.05
25 2 0.05
27 2 0.05
28 2 0.05
29 12 0.29
30 7 0.17
ACGTcount: A:0.34, C:0.10, G:0.02, T:0.53
Consensus pattern (30 bp):
AAATTTATTTAATATTTTATATTAATCCTC
Found at i:32334 original size:29 final size:29
Alignment explanation
Indices: 32302--32386 Score: 74
Period size: 29 Copynumber: 3.1 Consensus size: 29
32292 GATCTTAAAT
32302 TTATTTAATATTTTATATTAATCCTCAAA
1 TTATTTAATATTTTATATTAATCCTCAAA
* * * *
32331 TTATTT--TA---AAT-TTGATCTTCAAT
1 TTATTTAATATTTTATATTAATCCTCAAA
* *
32354 TTCTTTAATATTTTATATTAGTCCTCAAA
1 TTATTTAATATTTTATATTAATCCTCAAA
32383 TTAT
1 TTAT
32387 GATTTTATTC
Statistics
Matches: 39, Mismatches: 11, Indels: 12
0.63 0.18 0.19
Matches are distributed among these distances:
23 14 0.36
24 2 0.05
25 2 0.05
27 2 0.05
28 2 0.05
29 17 0.44
ACGTcount: A:0.33, C:0.11, G:0.02, T:0.54
Consensus pattern (29 bp):
TTATTTAATATTTTATATTAATCCTCAAA
Found at i:32922 original size:21 final size:21
Alignment explanation
Indices: 32896--32949 Score: 90
Period size: 21 Copynumber: 2.6 Consensus size: 21
32886 GCGTTGCATT
32896 TCGCGTTGCGATAATTGAAAA
1 TCGCGTTGCGATAATTGAAAA
* *
32917 TCGCGTTGTGATAGTTGAAAA
1 TCGCGTTGCGATAATTGAAAA
32938 TCGCGTTGCGAT
1 TCGCGTTGCGAT
32950 TTTCCATTTC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (21 bp):
TCGCGTTGCGATAATTGAAAA
Found at i:32966 original size:20 final size:20
Alignment explanation
Indices: 32938--33112 Score: 153
Period size: 20 Copynumber: 8.6 Consensus size: 20
32928 TAGTTGAAAA
32938 TCGCGTTGCGATTTTCCATT
1 TCGCGTTGCGATTTTCCATT
*
32958 TCGCATTGCGATTTTCCATT
1 TCGCGTTGCGATTTTCCATT
*
32978 TCGCGTTGCGATTTTCCAGT
1 TCGCGTTGCGATTTTCCATT
* *
32998 TCGCGTTGCGATAGTCTACC-GT
1 TCGCGTTGCGAT--T-TTCCATT
*
33020 T-GTCGTTGCGATTTTCCAAAT
1 TCG-CGTTGCGATTTTCC-ATT
* *
33041 T--CGTTGCGATAGTTTACAGT
1 TCGCGTTGCGAT--TTTCCATT
*
33061 T-GCCGTTGCGATTTTCCAGT
1 TCG-CGTTGCGATTTTCCATT
*
33081 TCGCGTTGCGATTTTCCAGT
1 TCGCGTTGCGATTTTCCATT
*
33101 TCCCGTTGCGAT
1 TCGCGTTGCGAT
33113 AGTTAAAAAA
Statistics
Matches: 134, Mismatches: 10, Indels: 22
0.81 0.06 0.13
Matches are distributed among these distances:
19 12 0.09
20 89 0.66
21 8 0.06
22 22 0.16
23 3 0.02
ACGTcount: A:0.13, C:0.24, G:0.23, T:0.40
Consensus pattern (20 bp):
TCGCGTTGCGATTTTCCATT
Found at i:32989 original size:40 final size:41
Alignment explanation
Indices: 32938--33112 Score: 184
Period size: 40 Copynumber: 4.3 Consensus size: 41
32928 TAGTTGAAAA
* * *
32938 TCGCGTTGCGATTTTCCATTTCGCATTGCGAT-TTTCCATT
1 TCGCGTTGCGATTTTCCAGTTCGCGTTGCGATATTTCCAGT
*
32978 TCGCGTTGCGATTTTCCAGTTCGCGTTGCGATAGTCTACC-GT
1 TCGCGTTGCGATTTTCCAGTTCGCGTTGCGATA-T-TTCCAGT
* *
33020 T-GTCGTTGCGATTTTCCAAATT--CGTTGCGATAGTTTACAGT
1 TCG-CGTTGCGATTTTCC-AGTTCGCGTTGCGATA-TTTCCAGT
33061 T-GCCGTTGCGATTTTCCAGTTCGCGTTGCGAT-TTTCCAGT
1 TCG-CGTTGCGATTTTCCAGTTCGCGTTGCGATATTTCCAGT
*
33101 TCCCGTTGCGAT
1 TCGCGTTGCGAT
33113 AGTTAAAAAA
Statistics
Matches: 115, Mismatches: 11, Indels: 18
0.80 0.08 0.12
Matches are distributed among these distances:
40 52 0.45
41 31 0.27
42 26 0.23
43 6 0.05
ACGTcount: A:0.13, C:0.24, G:0.23, T:0.40
Consensus pattern (41 bp):
TCGCGTTGCGATTTTCCAGTTCGCGTTGCGATATTTCCAGT
Found at i:33035 original size:42 final size:42
Alignment explanation
Indices: 32941--33092 Score: 170
Period size: 41 Copynumber: 3.7 Consensus size: 42
32931 TTGAAAATCG
* * * * *
32941 CGTTGCGATTTTCCATTTCGCATTGCGAT--TTTCCA-TTTC
1 CGTTGCGATTTTCCAGTTCGCGTTGCGATAGTCTACAGTTGC
* *
32980 GCGTTGCGATTTTCCAGTTCGCGTTGCGATAGTCTACCGTTGT
1 -CGTTGCGATTTTCCAGTTCGCGTTGCGATAGTCTACAGTTGC
* *
33023 CGTTGCGATTTTCCAAATT--CGTTGCGATAGTTTACAGTTGC
1 CGTTGCGATTTTCC-AGTTCGCGTTGCGATAGTCTACAGTTGC
33064 CGTTGCGATTTTCCAGTTCGCGTTGCGAT
1 CGTTGCGATTTTCCAGTTCGCGTTGCGAT
33093 TTTCCAGTTC
Statistics
Matches: 94, Mismatches: 12, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
40 30 0.32
41 33 0.35
42 26 0.28
43 5 0.05
ACGTcount: A:0.14, C:0.23, G:0.23, T:0.40
Consensus pattern (42 bp):
CGTTGCGATTTTCCAGTTCGCGTTGCGATAGTCTACAGTTGC
Found at i:33201 original size:6 final size:6
Alignment explanation
Indices: 33190--33252 Score: 105
Period size: 6 Copynumber: 11.0 Consensus size: 6
33180 GAAGACACGT
33190 ACGACC ACGACC ACGACC ACGACC ACGACC ACGACC ACGACC ACGACC
1 ACGACC ACGACC ACGACC ACGACC ACGACC ACGACC ACGACC ACGACC
33238 -CGACC -CGACC -CGACC
1 ACGACC ACGACC ACGACC
33253 CGAGACGGAC
Statistics
Matches: 57, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
5 15 0.26
6 42 0.74
ACGTcount: A:0.30, C:0.52, G:0.17, T:0.00
Consensus pattern (6 bp):
ACGACC
Found at i:33734 original size:6 final size:6
Alignment explanation
Indices: 33725--33755 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
33715 GCCGCCGCCA
33725 TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG T
1 TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG T
33756 AATACGTGTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.00, C:0.16, G:0.48, T:0.35
Consensus pattern (6 bp):
TCGTGG
Found at i:34036 original size:20 final size:20
Alignment explanation
Indices: 34003--34069 Score: 57
Period size: 20 Copynumber: 3.4 Consensus size: 20
33993 TTATTTTCTC
* *
34003 ATTT-AAAATAAATATCATA
1 ATTTAAAAATTAATATAATA
*
34022 ATTTAAAAATTAATATAAAA
1 ATTTAAAAATTAATATAATA
* * *
34042 ATATATTAAATT-TTATAATA
1 ATTTA-AAAATTAATATAATA
34062 ATTTAAAA
1 ATTTAAAA
34070 TGAAAATCAC
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
19 6 0.16
20 26 0.70
21 5 0.14
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.40
Consensus pattern (20 bp):
ATTTAAAAATTAATATAATA
Found at i:37630 original size:21 final size:21
Alignment explanation
Indices: 37604--37644 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
37594 AAAGGGAAAA
37604 AATAAAATAACAT-AAAAAAGT
1 AATAAAATAA-ATGAAAAAAGT
37625 AATAAAATAAATGAAAAAAG
1 AATAAAATAAATGAAAAAAG
37645 GAACCTATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 2 0.11
21 17 0.89
ACGTcount: A:0.73, C:0.02, G:0.07, T:0.17
Consensus pattern (21 bp):
AATAAAATAAATGAAAAAAGT
Found at i:37632 original size:59 final size:58
Alignment explanation
Indices: 37522--37635 Score: 142
Period size: 59 Copynumber: 1.9 Consensus size: 58
37512 AATAATAAAT
* * *
37522 ATTAAATAAATAAAAGGAAGGAAAAATAATAATAAGAAGAAAATAAGAAAATAAAAAGC
1 ATTAAATAAATAAAAGG-AGAAAAAATAATAATAACAAAAAAATAAGAAAATAAAAAGC
*
37581 ATTAAATAAATCAAAAGG-GAAAAAATAA-AATAACATAAAAAAGTAATAAAATAAA
1 ATTAAATAAAT-AAAAGGAGAAAAAATAATAATAACA-AAAAAA-TAAGAAAATAAA
37636 TGAAAAAAGG
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
57 6 0.12
58 14 0.29
59 22 0.46
60 6 0.12
ACGTcount: A:0.70, C:0.03, G:0.11, T:0.17
Consensus pattern (58 bp):
ATTAAATAAATAAAAGGAGAAAAAATAATAATAACAAAAAAATAAGAAAATAAAAAGC
Found at i:41637 original size:13 final size:13
Alignment explanation
Indices: 41619--41643 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
41609 GGCCGGCAGG
41619 TAATATATTATAC
1 TAATATATTATAC
41632 TAATATATTATA
1 TAATATATTATA
41644 GATGGCTTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (13 bp):
TAATATATTATAC
Found at i:46806 original size:42 final size:42
Alignment explanation
Indices: 46754--46846 Score: 141
Period size: 42 Copynumber: 2.2 Consensus size: 42
46744 ACTTAGTAAG
* * *
46754 TCCTTCGGGCCATCAATAAGTCTTTCGAGCATGATGCTTAAA
1 TCCTTAGGGCCATCAATAAGTCTTTAGAGCATGATGATTAAA
*
46796 TCCTTAGGGCCATCAGTAAGTCTTTAGAGCATGATGATTAAA
1 TCCTTAGGGCCATCAATAAGTCTTTAGAGCATGATGATTAAA
*
46838 TTCTTAGGG
1 TCCTTAGGG
46847 TAATTTGTAA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (42 bp):
TCCTTAGGGCCATCAATAAGTCTTTAGAGCATGATGATTAAA
Found at i:46963 original size:93 final size:93
Alignment explanation
Indices: 46804--46976 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
46794 AATCCTTAGG
* * * *
46804 GCCATCAGTAAGTCTTTAGAGCATGATGATTAAATTCTTAGGGTAATTTGTAAGCCTTCACGGAA
1 GCCATCAATAAGTCTTTAGAGCAAGATGATTAAATCCTTAGGGTAATTTGTAAGCCTTCACCGAA
46869 GAGTAGTGAAGCAAACCCATCAGTATGT
66 GAGTAGTGAAGCAAACCCATCAGTATGT
* *
46897 GCCATCAATAAGTCTTTCGAGCAAGATGATTAAATCCTTCGGGTAATTTGTAAGCCTTCACCGAA
1 GCCATCAATAAGTCTTTAGAGCAAGATGATTAAATCCTTAGGGTAATTTGTAAGCCTTCACCGAA
46962 GAGTAGTGAAGCAAA
66 GAGTAGTGAAGCAAA
46977 TTATCAGTAA
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (93 bp):
GCCATCAATAAGTCTTTAGAGCAAGATGATTAAATCCTTAGGGTAATTTGTAAGCCTTCACCGAA
GAGTAGTGAAGCAAACCCATCAGTATGT
Found at i:47504 original size:53 final size:53
Alignment explanation
Indices: 47441--47755 Score: 409
Period size: 53 Copynumber: 5.9 Consensus size: 53
47431 AAAATCACAC
*
47441 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGG
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAAG
* * * *
47494 CAGAAGATTGTTCGAGTTCTACTCCCTAAAGCAAGAGGGAGTGAACCCATAGG
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAAG
47547 CAGAAGATTGTTCGAGTTCTAC-CCCTGAAGCAAGAGGGAGCGAACCCGTAAG
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAAG
* * **
47599 CAGAAGATTATTCGAGTTCTACCCCCTGAAGCAAGAGGGAGCGAACATGTAAG
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAAG
* * * * ***
47652 CAGAAGATTATTTGAGTTCTACTCCCTGAAGCAATAGGGAGCGAACCCATTTT
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAAG
* * * * *
47705 TAGAAGATTGTTCGAGTTCCTTAATCCCTTAA-CAAGAGGGAACAAACCCGT
1 CAGAAGATTGTTCGAGTT-C-TACTCCCTGAAGCAAGAGGGAGCGAACCCGT
47756 CATTTGAAGA
Statistics
Matches: 231, Mismatches: 28, Indels: 5
0.88 0.11 0.02
Matches are distributed among these distances:
52 47 0.20
53 159 0.69
54 16 0.07
55 9 0.04
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.22
Consensus pattern (53 bp):
CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAAG
Found at i:47631 original size:105 final size:106
Alignment explanation
Indices: 47441--47699 Score: 403
Period size: 105 Copynumber: 2.5 Consensus size: 106
47431 AAAATCACAC
* *
47441 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGGCAGAAGATTGTT
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAAGCAGAAGATTATT
* * * *
47506 CGAGTTCTACTCCCTAAAGCAAGAGGGAGTGAACCCATAGG
66 CGAGTTCTACCCCCTAAAGCAAGAGGGAGCGAACACATAAG
47547 CAGAAGATTGTTCGAGTTCTAC-CCCTGAAGCAAGAGGGAGCGAACCCGTAAGCAGAAGATTATT
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAAGCAGAAGATTATT
* **
47611 CGAGTTCTACCCCCTGAAGCAAGAGGGAGCGAACATGTAAG
66 CGAGTTCTACCCCCTAAAGCAAGAGGGAGCGAACACATAAG
* * *
47652 CAGAAGATTATTTGAGTTCTACTCCCTGAAGCAATAGGGAGCGAACCC
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCC
47700 ATTTTTAGAA
Statistics
Matches: 140, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
105 94 0.67
106 46 0.33
ACGTcount: A:0.31, C:0.22, G:0.27, T:0.20
Consensus pattern (106 bp):
CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAAGCAGAAGATTATT
CGAGTTCTACCCCCTAAAGCAAGAGGGAGCGAACACATAAG
Found at i:48150 original size:24 final size:23
Alignment explanation
Indices: 48121--48193 Score: 64
Period size: 23 Copynumber: 3.3 Consensus size: 23
48111 GTTCTAGAGT
*
48121 AAAAAAGGAGGGGACCAGACATAG
1 AAAAAA-GAGGGAACCAGACATAG
* * * *
48145 AAAAAAAAGAGCA-CAGA-GT--
1 AAAAAAGAGGGAACCAGACATAG
48164 AAAAAAGAGGGAACCAGACATAG
1 AAAAAAGAGGGAACCAGACATAG
48187 AAAAAAG
1 AAAAAAG
48194 GAGAGCACAG
Statistics
Matches: 37, Mismatches: 8, Indels: 9
0.69 0.15 0.17
Matches are distributed among these distances:
19 10 0.27
20 4 0.11
21 2 0.05
22 4 0.11
23 11 0.30
24 6 0.16
ACGTcount: A:0.59, C:0.11, G:0.26, T:0.04
Consensus pattern (23 bp):
AAAAAAGAGGGAACCAGACATAG
Found at i:48180 original size:42 final size:44
Alignment explanation
Indices: 48116--48211 Score: 160
Period size: 43 Copynumber: 2.2 Consensus size: 44
48106 GGGCAGTTCT
*
48116 AGAGTAAAAAAGGAGGGGACCAGACATAGAAAAAA-AAGAGCAC
1 AGAGTAAAAAAGGAGGGAACCAGACATAGAAAAAAGAAGAGCAC
*
48159 AGAGTAAAAAA-GAGGGAACCAGACATAGAAAAAAGGAGAGCAC
1 AGAGTAAAAAAGGAGGGAACCAGACATAGAAAAAAGAAGAGCAC
48202 AGAGTAAAAA
1 AGAGTAAAAA
48212 CGGGAGAGAA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
42 22 0.44
43 28 0.56
ACGTcount: A:0.57, C:0.10, G:0.27, T:0.05
Consensus pattern (44 bp):
AGAGTAAAAAAGGAGGGAACCAGACATAGAAAAAAGAAGAGCAC
Found at i:49362 original size:29 final size:25
Alignment explanation
Indices: 49297--49367 Score: 63
Period size: 24 Copynumber: 2.7 Consensus size: 25
49287 TTTAGTCATA
* * *
49297 TTTTTAAATATGTATATA-CATGTT
1 TTTTTTAATTTGTATTTAGCATGTT
49321 TTTTTTAATTTGTAGTTTAGCATGTT
1 TTTTTTAATTTGTA-TTTAGCATGTT
*
49347 ATGTTTTTATTCTTGTATTTA
1 -T-TTTTTAAT-TTGTATTTA
49368 ATTCACATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
24 12 0.32
25 3 0.08
26 6 0.16
27 1 0.03
28 11 0.29
29 5 0.13
ACGTcount: A:0.24, C:0.04, G:0.11, T:0.61
Consensus pattern (25 bp):
TTTTTTAATTTGTATTTAGCATGTT
Found at i:52199 original size:22 final size:23
Alignment explanation
Indices: 52174--52229 Score: 62
Period size: 23 Copynumber: 2.4 Consensus size: 23
52164 TGTTATATTT
52174 TTATAAAAATTATA-TGA-AATAA
1 TTATAAAAATTATATTGATAAT-A
* *
52196 TTATAGAAAAGTATATTTATAATA
1 TTATA-AAAATTATATTGATAATA
52220 TTATAAAAAT
1 TTATAAAAAT
52230 ACTTATTTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
22 5 0.18
23 12 0.43
24 8 0.29
25 3 0.11
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.39
Consensus pattern (23 bp):
TTATAAAAATTATATTGATAATA
Found at i:52455 original size:23 final size:23
Alignment explanation
Indices: 52396--52464 Score: 86
Period size: 23 Copynumber: 3.0 Consensus size: 23
52386 AGATAATTTA
* *
52396 AAATAATCTTATTTCAAATAAAT
1 AAATAATATTATTTTAAATAAAT
* *
52419 AATTAAAATTATTTTAAATAAAT
1 AAATAATATTATTTTAAATAAAT
*
52442 AAATAATATGATTTTAAA-AAAT
1 AAATAATATTATTTTAAATAAAT
52464 A
1 A
52465 TTTTAAAATA
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
22 5 0.13
23 34 0.87
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.39
Consensus pattern (23 bp):
AAATAATATTATTTTAAATAAAT
Found at i:53226 original size:20 final size:20
Alignment explanation
Indices: 53203--53250 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
53193 ATTCATCTAG
*
53203 TATCGATATTGTTCATATAA
1 TATCGATATTGTTCATACAA
53223 TATCGATATTGTTCATACAA
1 TATCGATATTGTTCATACAA
53243 TATCGATA
1 TATCGATA
53251 CTCGAACCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.42
Consensus pattern (20 bp):
TATCGATATTGTTCATACAA
Found at i:54429 original size:21 final size:21
Alignment explanation
Indices: 54406--54445 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
54396 ATACTGACAA
*
54406 AAAATAGAAAAA-TGACATGG
1 AAAATAAAAAAATTGACATGG
54426 AAAATAAAAAAATTGACATG
1 AAAATAAAAAAATTGACATG
54446 ACATGTCACA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.62, C:0.05, G:0.15, T:0.17
Consensus pattern (21 bp):
AAAATAAAAAAATTGACATGG
Found at i:56555 original size:14 final size:15
Alignment explanation
Indices: 56527--56562 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
56517 AATTTTCTTC
*
56527 TATTTATTAATTTTT
1 TATTTATTAAATTTT
56542 TATTT-TTAAATTTT
1 TATTTATTAAATTTT
56556 TATTTAT
1 TATTTAT
56563 ATTTATCTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 13 0.68
15 6 0.32
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (15 bp):
TATTTATTAAATTTT
Found at i:56578 original size:27 final size:27
Alignment explanation
Indices: 56548--56634 Score: 97
Period size: 27 Copynumber: 3.2 Consensus size: 27
56538 TTTTTATTTT
*
56548 TAAATTTTTATTTATATTTATCTCATA
1 TAAAATTTTATTTATATTTATCTCATA
** *
56575 TAAAAAATTATGTTATTATATATACTC-T-
1 TAAAATTTTAT-TTA-TATTTAT-CTCATA
56603 TAAAATTTTATTTATATTTATCTCATA
1 TAAAATTTTATTTATATTTATCTCATA
56630 TAAAA
1 TAAAA
56635 ATATATTGAA
Statistics
Matches: 48, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
25 3 0.06
26 7 0.15
27 16 0.33
28 12 0.25
29 7 0.15
30 3 0.06
ACGTcount: A:0.40, C:0.07, G:0.01, T:0.52
Consensus pattern (27 bp):
TAAAATTTTATTTATATTTATCTCATA
Found at i:56636 original size:28 final size:28
Alignment explanation
Indices: 56553--56636 Score: 95
Period size: 28 Copynumber: 3.0 Consensus size: 28
56543 ATTTTTAAAT
56553 TTTTATTTATATTTATCTCATATAAAAA
1 TTTTATTTATATTTATCTCATATAAAAA
* *
56581 -ATTATGTTATTATATATACTC-T-T-AAAA
1 TTTTAT-TTA-TATTTAT-CTCATATAAAAA
56608 TTTTATTTATATTTATCTCATATAAAAA
1 TTTTATTTATATTTATCTCATATAAAAA
56636 T
1 T
56637 ATATTGAATG
Statistics
Matches: 45, Mismatches: 4, Indels: 14
0.71 0.06 0.22
Matches are distributed among these distances:
25 3 0.07
26 7 0.16
27 12 0.27
28 13 0.29
29 7 0.16
30 3 0.07
ACGTcount: A:0.39, C:0.07, G:0.01, T:0.52
Consensus pattern (28 bp):
TTTTATTTATATTTATCTCATATAAAAA
Found at i:59430 original size:21 final size:21
Alignment explanation
Indices: 59388--59430 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
59378 TTTCTGGGCT
* *
59388 AGGGGAATCGGTACCCATTCA
1 AGGGGAATCGATACCCACTCA
*
59409 AGGGGAATCGATACCCCCTCA
1 AGGGGAATCGATACCCACTCA
59430 A
1 A
59431 CGAATATGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.28, G:0.26, T:0.16
Consensus pattern (21 bp):
AGGGGAATCGATACCCACTCA
Found at i:60171 original size:23 final size:23
Alignment explanation
Indices: 60127--60171 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
60117 ATTATTATAT
*
60127 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTATACGC
* *
60150 GGCACTTCGGTGCATTTATACG
1 GGCACTACGGTGCAATTATACG
60172 AGCTGTGGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.27
Consensus pattern (23 bp):
GGCACTACGGTGCAATTATACGC
Done.