Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003247.1 Hibiscus syriacus cultivar Beakdansim tig00006827_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92792

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2109--2138
14
2.1
14
93
0
51
40
23
13
23
1.90
3568--3607
12
3.0
13
82
17
55
45
0
2
52
1.14
4923--4949
2
13.5
2
100
0
54
48
0
0
51
1.00
5187--5238
2
26.0
2
100
0
104
50
0
0
50
1.00
5347--5397
19
2.7
19
75
9
59
21
3
3
70
1.20
5392--5439
24
2.0
25
84
8
64
10
10
4
75
1.18
5347--5419
38
1.9
38
83
5
94
19
6
2
71
1.21
15910--15953
20
2.2
19
92
8
70
86
11
2
0
0.66
15910--15953
14
3.1
14
86
3
61
86
11
2
0
0.66
16748--17569
105
8.0
105
90
5
1322
34
25
18
22
1.96
17278--17582
92
3.2
91
81
9
369
34
24
17
22
1.96
17170--17582
191
2.1
195
88
4
627
34
25
17
22
1.96
17627--17668
20
2.1
20
95
0
75
26
21
16
35
1.94
17883--17922
12
3.0
13
82
17
55
45
0
2
52
1.14
19247--19291
2
22.5
2
95
0
81
48
2
0
48
1.13
19407--19460
23
2.5
20
81
18
65
29
1
1
66
1.12
19409--19461
20
2.7
18
76
18
52
30
1
1
66
1.13
27090--27133
22
2.0
22
90
0
70
15
29
15
38
1.89
29043--29082
19
2.2
18
86
4
53
52
10
2
35
1.48
29072--29110
15
2.6
15
100
0
78
43
20
0
35
1.52
40475--40520
20
2.2
21
84
3
58
43
6
0
50
1.28
40478--40562
25
3.3
25
76
12
75
42
3
1
52
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40519--40564
20
2.2
21
88
3
67
45
0
2
52
1.13
40591--40650
30
2.0
29
90
9
95
58
0
0
41
0.98
40731--40809
24
3.2
25
80
12
92
56
0
2
40
1.12
40731--40815
25
3.3
26
73
20
81
56
0
2
41
1.12
41235--41293
31
1.9
31
85
0
82
57
5
5
32
1.42
41944--42005
16
4.1
15
90
10
99
35
0
0
64
0.94
41954--41998
9
5.4
9
75
20
53
35
0
0
64
0.94
64502--64577
35
2.2
35
92
0
125
39
23
1
35
1.63
64973--65220
130
1.9
130
93
0
424
36
15
12
35
1.86
64987--65251
130
2.0
129
82
4
318
39
13
12
33
1.83
65461--65525
25
2.6
25
97
0
121
46
3
3
47
1.33
65714--65747
16
2.0
18
88
11
54
64
5
2
26
1.30
75776--76603
51
15.9
55
92
3
468
28
26
15
29
1.96
75902--76613
51
13.9
51
96
0
1244
27
27
15
29
1.96
77953--78053
18
5.7
18
68
24
54
3
22
0
72
1.08
77977--78023
12
3.8
13
77
11
53
6
21
2
70
1.20
77943--78053
27
4.2
26
72
15
86
4
22
0
72
1.09
77943--78053
45
2.5
44
81
11
127
4
22
0
72
1.09
77998--78060
17
3.4
18
86
10
67
6
19
1
73
1.13
78013--78063
17
2.8
18
91
5
77
5
19
0
74
1.02
80437--80466
4
7.2
4
92
7
51
50
0
26
23
1.50
86515--86612
44
2.1
46
87
7
137
39
22
11
26
1.87

Tables:   1

The End!