Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003250.1 Hibiscus syriacus cultivar Beakdansim tig00006833_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86110

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74--117
22
2.0
22
95
0
79
40
15
18
25
1.90
133--259
20
6.3
20
82
5
166
27
27
20
24
1.99
3335--3368
17
2.0
17
94
0
59
52
26
2
17
1.58
3543--3790
20
13.4
20
71
17
162
35
21
20
23
1.96
3548--3757
53
3.9
53
90
6
309
35
21
20
21
1.96
3548--3757
107
2.0
107
90
0
332
35
21
20
21
1.96
3928--4007
30
2.4
34
78
20
105
55
15
2
27
1.53
3943--4008
30
2.2
30
97
0
123
54
13
1
30
1.48
5959--5998
20
2.0
20
95
0
71
50
17
10
22
1.76
6053--6190
34
3.9
34
74
11
132
18
21
24
35
1.95
6053--6209
20
8.4
20
70
19
106
19
20
24
36
1.95
6053--6198
74
2.0
75
97
1
276
19
20
23
36
1.95
8106--8161
20
2.8
20
91
0
85
50
21
16
12
1.78
8129--8184
20
2.8
20
88
0
76
35
23
17
23
1.95
8708--8801
20
4.7
20
79
7
109
23
22
26
27
1.99
8704--8781
41
1.9
41
91
0
129
23
21
24
30
1.99
8687--8842
61
2.5
60
78
5
177
22
21
23
32
1.98
8831--8896
21
3.2
19
79
14
69
31
19
19
28
1.97
9534--9563
2
15.5
2
93
6
53
50
0
0
50
1.00
12672--12820
75
2.0
75
100
0
298
41
12
6
39
1.69
15719--15816
50
2.0
50
87
2
144
34
15
27
22
1.94
23297--23361
33
2.1
33
82
8
82
64
1
3
30
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23308--23346
18
2.1
19
85
4
53
61
0
2
35
1.10
23327--23364
15
2.7
14
88
8
51
68
0
2
28
1.03
29578--29615
18
2.1
19
90
5
60
28
0
2
68
1.03
29613--29670
28
2.0
31
83
16
79
32
3
0
63
1.11
39799--39868
31
2.3
31
97
0
131
21
22
20
35
1.96
41411--41446
2
18.0
2
100
0
72
50
0
0
50
1.00
41451--41508
18
3.2
18
100
0
116
43
5
12
39
1.64
44371--44406
16
2.3
15
90
4
54
52
5
0
41
1.24
56674--56710
19
1.9
19
88
0
56
24
21
2
51
1.61
56763--56800
6
6.5
6
87
6
60
31
15
0
52
1.43
63850--63895
24
1.9
23
82
8
56
36
0
0
63
0.95
63857--63904
16
2.9
16
81
6
51
33
2
0
64
1.05
69786--69832
23
2.0
23
95
0
85
38
17
6
38
1.75
74466--74490
4
6.2
4
100
0
50
24
0
0
76
0.80
74885--74924
20
2.0
20
100
0
80
50
15
5
30
1.65
77021--77047
2
13.5
2
100
0
54
51
0
0
48
1.00
84707--84734
2
14.0
2
100
0
56
50
0
0
50
1.00

Tables:   1

The End!