genome.fa.s3251.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003251.1 Hibiscus syriacus cultivar Beakdansim tig00006834_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  242961

Tables:   1   

This is table  1  of  1  ( 90 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10372--10434	31	2.0	31	100	0	126	19	19	25	36	1.94
17412--17486	38	2.0	37	82	10	91	46	2	2	48	1.30
24546--24602	18	3.2	18	71	14	55	56	0	0	43	0.99
24530--24584	26	2.2	26	87	6	78	58	0	0	41	0.98
24556--24644	42	2.1	43	81	6	110	55	1	2	41	1.20
41368--41393	2	13.0	2	100	0	52	50	0	50	0	1.00
42043--42155	59	1.9	59	81	5	138	32	7	18	40	1.80
53443--53603	19	8.3	19	66	15	71	29	11	14	44	1.81
53431--53603	39	4.5	39	81	4	206	30	11	14	43	1.81
53431--53604	77	2.2	77	84	4	217	31	11	14	43	1.81
53575--53635	31	2.0	31	90	6	97	34	16	8	40	1.78
55424--55457	2	17.0	2	100	0	68	50	0	0	50	1.00
56330--56370	22	1.9	21	90	5	64	24	0	4	70	1.06
57067--57092	10	2.6	10	100	0	52	57	0	11	30	1.34
58025--58084	31	1.9	31	86	0	84	65	6	15	13	1.46
61183--61263	8	11.4	7	68	21	53	44	1	2	51	1.22
61194--61580	28	13.9	28	73	10	222	42	4	3	49	1.41
61388--61427	8	5.5	8	77	22	52	42	0	7	50	1.30
61243--61581	42	8.1	42	81	4	321	42	5	4	48	1.44
61194--61581	14	27.9	14	71	5	185	42	4	3	49	1.41
63685--64026	173	2.0	173	98	0	666	37	19	4	39	1.71
64747--64807	30	2.0	30	87	0	86	31	31	22	14	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66568--66794	118	1.9	119	84	2	305	52	4	12	30	1.58
71346--71387	21	2.0	21	81	9	50	38	0	4	57	1.20
84032--84065	6	5.7	6	96	0	59	50	0	38	11	1.39
87208--87283	2	38.0	2	94	0	134	48	1	1	48	1.18
88986--89023	12	2.8	13	88	11	51	36	7	0	55	1.29
89055--89121	29	2.3	29	100	0	134	38	17	2	40	1.65
89181--89218	2	19.0	2	100	0	76	50	0	0	50	1.00
89321--89378	23	2.5	23	88	0	80	25	24	27	22	2.00
100837--100898	31	2.0	31	90	0	97	24	16	14	45	1.84
104077--104109	17	1.9	17	93	0	57	27	0	27	45	1.54
108154--108283	64	2.0	64	100	0	260	39	26	10	23	1.87
109979--110025	19	2.4	20	85	3	60	34	10	6	48	1.63
111033--111107	36	2.1	36	100	0	150	36	8	13	42	1.73
118720--118755	18	2.0	18	100	0	72	33	16	33	16	1.92
122478--122515	17	2.1	19	90	9	62	44	2	0	52	1.14
123976--124292	158	2.0	158	96	0	589	35	21	14	28	1.92
125729--125779	25	2.0	25	100	0	102	45	19	7	27	1.78
127040--127101	31	2.2	28	83	13	74	29	29	24	17	1.97
129160--129206	20	2.5	19	80	10	60	51	21	12	14	1.76
137090--137134	18	2.5	18	92	0	81	35	6	26	31	1.82
138531--138564	12	2.9	12	95	4	61	8	8	50	32	1.64
138670--138702	13	2.5	13	90	0	57	15	15	48	21	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
142211--142249	2	19.5	2	100	0	78	48	0	0	51	1.00
144085--144162	27	2.9	27	94	0	129	11	20	42	25	1.86
144093--144289	27	7.3	27	90	2	243	15	16	47	20	1.83
144771--144802	2	16.0	2	100	0	64	50	0	0	50	1.00
150666--150739	37	2.0	37	94	0	130	35	10	8	45	1.69
155351--155377	2	13.5	2	100	0	54	51	0	0	48	1.00
156347--156438	31	3.0	31	78	12	84	47	5	2	44	1.38
158116--158183	31	2.2	31	81	5	75	32	14	13	39	1.85
158542--158582	21	2.0	21	90	0	64	21	21	14	41	1.89
158547--158589	21	2.0	21	81	0	50	25	23	16	34	1.95
158599--158637	20	2.0	20	94	0	69	46	23	15	15	1.83
158768--158827	26	2.3	26	97	0	111	21	35	10	33	1.87
159184--159237	20	2.7	19	80	2	63	18	16	20	44	1.87
160928--161047	63	1.9	63	82	3	152	22	15	32	30	1.94
161013--161061	21	2.3	21	82	0	62	16	20	32	30	1.94
161374--161441	21	3.2	21	78	12	84	25	35	19	20	1.96
161344--161463	43	2.8	43	83	5	129	24	34	17	24	1.96
162853--162973	37	3.6	36	70	23	109	30	2	14	52	1.55
162826--162985	64	2.5	64	89	5	259	30	2	15	52	1.55
165754--165807	24	2.2	24	86	0	72	40	18	16	24	1.90
166735--166833	40	2.4	41	83	6	130	31	11	22	35	1.89
166743--166823	19	4.1	19	89	7	117	30	11	23	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
166735--166836	21	5.0	21	88	5	140	31	10	22	35	1.89
166845--166894	20	2.4	21	86	3	66	24	18	16	42	1.89
166866--166921	19	2.9	19	74	12	60	23	14	21	41	1.89
167158--167203	12	4.2	12	84	13	55	50	2	0	47	1.13
172221--172481	42	6.1	42	71	14	146	24	16	6	52	1.66
172216--172506	43	6.8	44	73	13	162	25	15	5	53	1.64
172393--172506	41	2.7	44	79	15	132	22	15	4	57	1.57
175550--175603	26	2.1	26	100	0	108	27	3	33	35	1.75
177615--177648	16	2.1	16	88	0	50	17	23	17	41	1.90
183869--183893	2	12.5	2	100	0	50	52	0	48	0	1.00
185796--185873	31	2.5	31	89	0	120	53	14	7	24	1.66
186033--186138	31	3.4	31	85	2	142	52	17	9	19	1.71
190279--190345	30	2.2	30	84	5	82	29	11	14	43	1.82
191738--191787	19	2.6	19	96	0	91	24	30	20	26	1.98
193700--193727	2	14.0	2	100	0	56	50	0	0	50	1.00
209942--209973	2	16.0	2	93	0	55	3	46	0	50	1.17
212672--213058	190	2.0	192	91	2	636	45	12	13	27	1.80
214748--214797	16	3.1	16	94	0	91	52	4	12	32	1.57
225038--225125	32	2.8	32	73	14	85	32	17	17	32	1.93
238830--239023	30	6.5	30	79	5	180	36	18	22	22	1.95
238857--239033	60	3.0	61	84	3	200	36	17	23	22	1.94
238857--239023	90	1.9	89	85	6	230	35	17	22	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
240439--240486	24	2.0	23	84	11	62	14	27	6	52	1.66
241154--241250	48	2.0	48	86	4	133	19	19	12	48	1.80

Tables:   1

The End!