Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003252.1 Hibiscus syriacus cultivar Beakdansim tig00006835_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68337

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52--133
20
3.6
20
70
26
65
37
0
9
52
1.35
202--287
30
2.8
31
84
8
113
34
1
11
52
1.45
16--287
61
4.8
63
82
12
239
36
0
10
52
1.39
408--466
31
1.9
31
92
0
100
42
10
6
40
1.65
484--526
16
2.7
16
96
0
77
25
6
4
62
1.40
16748--16883
63
2.2
63
91
0
218
30
19
22
27
1.98
16939--16996
20
2.6
23
78
18
77
29
20
25
24
1.99
17343--17406
28
2.2
28
86
5
83
39
4
25
31
1.76
17613--17680
23
3.0
23
84
0
82
22
26
25
26
2.00
17756--17788
14
2.4
14
90
10
50
39
6
21
33
1.78
24269--24330
30
2.1
30
93
0
106
40
3
20
35
1.69
24273--24337
30
2.2
30
88
0
94
41
4
20
33
1.72
24547--24614
23
3.0
23
86
0
91
20
26
26
26
1.99
24690--24722
14
2.4
14
90
10
50
39
6
21
33
1.78
25390--25487
32
3.1
32
77
5
101
31
23
25
19
1.98
27472--27506
17
2.1
17
88
0
52
40
8
14
37
1.76
27481--27524
16
2.6
17
82
7
54
38
9
18
34
1.82
30087--30147
26
2.3
26
88
0
95
21
21
8
49
1.75
30909--31105
36
5.5
35
86
4
261
20
25
24
28
1.99
32841--32898
29
2.0
29
93
0
98
22
12
6
58
1.57
38010--38153
39
3.6
39
87
2
189
47
2
3
46
1.31
38005--38153
79
1.9
82
88
4
232
47
2
4
46
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38751--38815
2
32.5
2
100
0
130
49
0
0
50
1.00
38796--39075
36
7.6
35
73
18
187
45
3
5
45
1.44
38876--39106
71
3.2
71
82
7
225
44
3
5
47
1.40
39166--39209
21
2.1
22
79
12
56
15
2
4
77
1.04
40278--40323
20
2.3
20
78
17
51
26
2
4
67
1.21
40580--40609
13
2.3
13
100
0
60
33
0
0
66
0.92
42164--42415
125
2.0
125
99
0
495
32
15
10
40
1.82
42407--42450
19
2.4
18
92
7
72
11
11
9
68
1.40
45881--47352
84
17.8
82
80
5
1416
30
25
20
23
1.99
45881--47352
165
8.9
165
85
3
1438
30
25
20
23
1.99
45860--47336
745
2.0
745
91
1
2370
30
25
20
23
1.99
47847--47897
2
26.0
2
80
4
59
47
3
3
45
1.40
47953--48137
75
2.5
72
83
8
228
45
3
5
45
1.44
49357--49412
23
2.5
22
81
13
69
25
1
3
69
1.14
49362--49409
20
2.4
20
80
16
55
25
2
4
68
1.18
49469--49510
5
8.4
5
79
10
50
21
0
2
76
0.90
49664--49693
13
2.3
13
94
0
51
33
3
0
63
1.11
50368--50405
20
1.9
20
89
10
60
36
10
2
50
1.51
55509--55604
38
2.5
38
89
0
138
26
19
26
28
1.99

Tables:   1

The End!