Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003253.1 Hibiscus syriacus cultivar Beakdansim tig00006836_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76957

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
128--167
20
2.0
21
90
5
64
62
5
15
17
1.49
2233--2312
25
3.1
27
76
18
80
41
7
1
50
1.39
4545--4585
15
2.7
15
76
23
50
4
39
0
56
1.21
5036--5078
21
2.0
21
86
0
59
30
27
25
16
1.97
5770--5814
23
2.0
23
86
0
63
20
26
26
26
1.99
7523--7557
17
2.0
18
88
5
54
31
0
5
62
1.18
16315--16397
42
2.0
42
100
0
166
40
0
38
20
1.53
25513--25539
6
4.5
6
100
0
54
29
18
33
18
1.95
35271--35311
18
2.3
18
80
15
50
48
0
2
48
1.14
36959--37025
36
1.9
34
85
8
91
43
29
20
5
1.76
45807--45853
23
2.0
24
83
4
60
34
2
25
38
1.68
46905--46975
35
2.0
35
94
0
124
45
7
23
23
1.78
52145--52209
32
2.1
31
82
2
76
53
9
7
29
1.60
56311--56337
3
9.0
3
100
0
54
33
0
0
66
0.92
57169--57221
21
2.5
21
100
0
106
35
15
11
37
1.83
57760--57809
2
25.0
2
95
0
91
52
0
0
48
1.00
58571--58612
21
2.0
20
86
4
57
38
14
7
40
1.73
63184--63225
21
2.0
20
86
4
57
38
14
7
40
1.73
64592--64619
2
14.0
2
100
0
56
50
0
0
50
1.00
65397--65516
42
2.9
42
96
0
222
16
20
18
44
1.87
65705--65765
22
2.8
23
82
7
65
47
0
0
52
1.00
65716--65794
31
2.5
32
80
16
92
48
1
0
50
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65840--65892
20
2.7
19
73
18
54
47
1
1
49
1.23
65887--65930
23
2.0
23
81
4
54
54
2
2
40
1.25
66050--66119
20
3.5
20
94
0
122
35
12
10
41
1.77
66050--66128
40
2.0
40
89
0
122
35
13
8
41
1.76
66102--66183
15
5.5
15
88
2
121
35
19
7
37
1.80
66102--66183
30
2.8
30
94
1
139
35
19
7
37
1.80
66102--66188
45
2.0
44
93
2
147
33
19
6
40
1.78
66477--66510
5
6.8
5
100
0
68
20
58
0
20
1.39
71522--71593
34
2.1
33
80
12
83
27
0
25
47
1.52
71901--72001
33
3.1
33
97
0
184
21
26
9
41
1.84

Tables:   1

The End!