Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003255.1 Hibiscus syriacus cultivar Beakdansim tig00006841_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81782

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12231--12834
247
2.4
241
83
13
756
27
11
19
41
1.86
15975--16000
10
2.6
10
100
0
52
53
11
7
26
1.63
19169--19239
36
2.0
36
97
0
133
30
12
5
50
1.63
22714--22767
25
2.3
23
81
9
65
51
0
0
48
1.00
22716--22774
22
2.6
23
79
12
68
47
0
0
52
1.00
22834--22898
19
3.5
19
68
19
55
53
0
4
41
1.21
25294--25351
23
2.5
22
89
8
89
51
17
24
6
1.69
37946--38390
153
2.9
150
82
4
509
29
23
12
34
1.91
48625--48667
22
2.0
22
86
4
61
51
6
4
37
1.50
53545--53579
17
2.1
17
89
10
54
62
2
5
28
1.32
55638--55760
61
2.0
61
90
0
192
23
8
7
60
1.52
60198--60240
14
2.9
15
78
21
54
53
2
0
44
1.13
60198--60240
16
2.8
16
83
16
63
53
2
0
44
1.13
61626--61659
17
2.0
17
88
0
50
0
8
8
82
0.85
66751--66823
24
3.0
24
82
9
94
17
9
13
58
1.61
67012--67069
24
2.4
24
91
0
89
6
12
20
60
1.54
68477--68591
35
3.4
34
94
5
198
40
0
9
49
1.35
68477--68613
67
2.0
66
84
8
179
40
0
8
50
1.39
72014--72098
31
2.8
31
82
5
93
40
7
12
40
1.71
74785--74874
29
3.0
32
74
12
100
45
14
3
36
1.61

Tables:   1

The End!