genome.fa.s3256.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003256.1 Hibiscus syriacus cultivar Beakdansim tig00006842_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97166

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5659--5729	10	6.5	10	74	17	52	57	15	11	15	1.65
5695--5738	10	4.4	10	85	0	61	61	9	9	20	1.53
5914--5944	14	2.2	14	94	0	53	54	22	16	6	1.64
8048--8167	59	2.0	59	95	0	213	29	22	10	37	1.88
10424--10464	12	3.5	12	78	18	50	9	2	12	75	1.13
11465--11530	29	2.3	29	97	0	123	33	30	6	30	1.82
15429--15497	35	1.9	37	85	11	99	59	7	4	28	1.44
20187--20226	20	2.0	20	85	9	55	40	2	2	55	1.27
20836--20866	4	7.8	4	100	0	62	25	22	0	51	1.48
21315--21346	11	3.1	11	91	8	50	40	0	0	59	0.97
31461--31567	42	2.6	41	81	1	124	25	23	22	28	1.99
31344--31745	214	1.9	214	93	0	687	34	14	18	32	1.91
31781--31864	42	2.0	42	95	0	150	26	20	22	30	1.98
31910--32001	42	2.2	41	84	7	116	22	17	23	35	1.95
32368--32627	53	4.9	53	90	1	405	31	21	26	20	1.98
32801--32832	11	3.1	11	91	8	50	40	0	0	59	0.97
36418--36540	58	2.1	58	90	3	203	28	31	17	22	1.96
40095--40180	31	2.8	31	81	0	109	46	1	2	50	1.21
43406--43430	2	12.5	2	100	0	50	52	0	0	48	1.00
50851--50927	31	2.5	31	80	2	91	27	31	27	14	1.95
50804--50927	63	2.0	63	82	6	153	25	29	28	16	1.97
51798--51845	7	7.1	7	86	9	73	25	29	31	14	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51847--51889	17	2.5	17	100	0	86	9	23	48	18	1.76
51830--51877	22	2.2	22	100	0	96	8	22	50	18	1.74
51809--51872	12	5.3	12	83	11	78	15	25	42	17	1.88
51886--51984	9	10.3	9	73	10	63	29	25	27	18	1.98
51892--51985	19	4.8	19	75	13	68	29	25	25	19	1.98
51911--51985	29	2.5	31	85	8	111	29	25	26	18	1.98
57075--57136	17	3.9	17	80	20	89	12	24	45	17	1.84
57055--57085	7	4.4	7	100	0	62	25	29	29	16	1.96
57061--57137	29	2.6	29	93	4	127	16	24	41	16	1.89
57087--57119	12	2.8	12	100	0	66	12	24	45	18	1.83
57165--57223	20	2.9	21	83	14	79	30	23	27	18	1.98
57158--57222	30	2.2	28	86	13	87	29	26	27	16	1.97
57165--57223	10	5.9	10	77	18	61	30	23	27	18	1.98
61623--61700	11	7.4	11	72	12	56	39	0	3	56	1.18
61607--61675	31	2.2	31	94	2	120	46	0	4	49	1.21
62894--62929	18	2.0	18	88	0	54	52	0	2	44	1.15
72212--72248	2	18.5	2	100	0	74	51	48	0	0	1.00
73380--73440	34	1.9	29	90	10	77	24	1	1	72	1.03
73433--73476	23	2.0	22	90	4	70	22	4	6	65	1.35
84666--84701	14	2.5	15	90	9	65	38	0	0	61	0.96
84664--84886	66	3.4	65	70	17	131	37	0	6	56	1.25
84680--84825	51	2.8	50	85	13	174	39	0	6	54	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84773--85160	32	12.7	32	86	10	553	35	0	10	54	1.35
84857--85240	96	4.2	93	86	10	466	34	0	11	53	1.40
85113--85264	80	1.9	80	93	2	218	32	0	13	53	1.44
85284--85342	31	1.9	31	89	0	91	44	10	5	40	1.60
90198--90260	31	2.0	31	100	0	126	47	9	22	20	1.78

Tables:   1

The End!