genome.fa.s3257.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003257.1 Hibiscus syriacus cultivar Beakdansim tig00006843_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110696

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22350--22386	20	1.9	19	89	10	58	45	10	24	18	1.81
23334--23384	2	25.5	2	95	0	93	47	0	0	52	1.00
23883--23925	22	2.0	22	95	0	77	51	11	0	37	1.39
23873--24439	54	10.6	54	67	22	306	53	13	0	32	1.42
23885--23933	22	2.2	22	85	3	62	55	12	0	32	1.37
23905--24060	32	4.7	32	67	20	113	52	14	0	33	1.41
23887--24596	80	8.8	81	82	11	761	53	13	0	32	1.42
23968--24027	22	2.7	22	92	0	102	53	13	0	33	1.40
23942--24271	134	2.5	133	91	3	456	53	14	0	32	1.44
23883--24385	102	4.7	102	79	12	568	53	14	0	32	1.43
24041--24115	22	3.2	23	75	17	82	54	17	1	26	1.51
24177--24250	22	3.2	22	69	19	53	54	14	0	31	1.41
24163--24385	32	5.8	39	70	29	128	53	14	0	31	1.41
24256--24330	22	3.2	22	75	9	78	57	17	0	25	1.40
23985--24330	134	2.6	130	89	6	427	53	14	0	32	1.43
24365--24407	22	2.0	22	100	0	86	51	13	0	34	1.42
24253--24573	134	2.4	131	85	9	366	53	14	0	32	1.41
24367--24415	22	2.2	22	88	3	71	55	14	0	30	1.40
24422--24488	22	2.8	24	80	15	84	55	19	0	25	1.43
24423--24496	22	3.2	22	76	19	71	55	17	0	27	1.42
24450--24663	54	4.1	52	86	8	244	52	8	0	38	1.33
24124--24596	166	2.9	162	84	8	629	53	13	0	32	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24544--24611	14	4.5	14	74	15	64	55	5	0	38	1.24
24323--24620	134	2.2	132	86	8	453	53	12	0	33	1.38
24576--24663	15	5.5	15	79	18	88	52	3	0	44	1.18
24544--24686	52	3.1	46	80	16	170	51	6	0	41	1.27
24980--25049	13	5.7	12	73	17	63	42	0	0	57	0.99
24982--25055	23	3.0	24	81	15	87	44	0	0	55	0.99
24951--25059	27	4.5	23	68	21	62	39	0	0	59	1.04
25019--25091	28	2.5	28	80	14	85	35	1	1	61	1.13
29872--29953	3	25.3	3	80	11	83	29	3	0	67	1.08
29879--29943	13	4.8	13	83	14	78	30	4	0	64	1.14
29882--29936	16	3.5	16	90	2	85	30	5	0	63	1.17
29872--29956	13	6.1	13	77	20	66	28	3	0	68	1.06
29872--29954	10	8.1	10	79	16	82	28	3	0	67	1.07
29878--29953	7	10.3	7	77	19	75	28	3	0	67	1.09
31708--31733	11	2.4	11	100	0	52	26	0	0	73	0.84
43768--43837	35	2.0	35	97	0	131	47	10	17	25	1.78
47752--47784	11	3.3	10	88	12	50	6	33	9	51	1.58
48907--48981	31	2.4	31	100	0	150	33	14	14	37	1.87
49133--49164	2	16.5	2	93	6	57	50	0	0	50	1.00
49151--49233	34	2.5	33	92	5	141	38	0	0	61	0.96
49139--49233	34	2.8	34	89	9	133	40	0	0	60	0.97
54794--54841	2	24.0	2	100	0	96	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54881--54946	33	2.0	33	87	0	96	18	7	28	45	1.76
55640--55705	15	4.3	16	76	16	52	54	3	3	39	1.31
55640--55694	16	3.6	14	80	20	58	54	1	3	40	1.28
59757--59795	20	2.0	20	89	0	60	25	12	0	61	1.31
70346--70391	22	2.1	22	83	0	56	19	21	36	21	1.95
71179--71204	13	2.0	13	100	0	52	23	23	7	46	1.78
71531--71584	25	2.2	23	78	12	54	33	0	3	62	1.12
79039--79073	2	17.5	2	100	0	70	48	0	0	51	1.00
82685--83002	159	2.0	158	99	0	627	27	24	17	30	1.97
89028--89069	20	2.2	20	86	4	59	64	21	0	14	1.29
97304--97399	2	54.0	2	71	22	63	56	0	0	43	0.99
97303--97394	9	10.8	8	75	17	62	57	0	0	42	0.98
97301--97384	33	2.5	34	98	1	161	59	0	0	40	0.97
97313--97392	42	1.9	42	87	5	117	58	0	0	41	0.98
107323--107382	28	2.1	28	81	3	75	41	8	1	48	1.43

Tables:   1

The End!