Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003259.1 Hibiscus syriacus cultivar Beakdansim tig00006848_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73494

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2840--2896
16
3.6
16
90
0
96
56
22
14
7
1.62
3969--4026
10
5.4
10
75
15
53
53
24
12
10
1.68
3976--4027
24
2.2
24
92
0
86
51
25
13
9
1.71
3976--4037
24
2.6
24
86
0
70
50
25
12
11
1.74
5287--5459
27
6.4
27
92
0
274
17
29
17
35
1.93
10011--10035
11
2.3
11
100
0
50
28
0
0
72
0.86
11532--11589
25
2.3
25
100
0
116
29
18
8
43
1.80
13075--13120
17
2.9
15
81
12
56
50
6
13
30
1.66
13078--13111
17
2.0
17
94
0
59
44
5
11
38
1.65
13074--13120
16
2.9
17
78
12
55
48
6
12
31
1.66
13074--13121
15
3.1
15
80
11
60
47
6
12
33
1.66
13169--13279
33
3.5
33
90
3
165
45
14
8
32
1.74
25583--25707
31
4.0
31
92
2
198
40
22
18
19
1.92
26367--26584
64
3.4
64
84
3
235
27
19
19
33
1.96
31391--31449
29
2.0
29
96
0
109
25
11
13
49
1.76
33212--33252
18
2.3
17
87
8
55
39
0
0
60
0.96
34032--34097
12
5.3
13
68
18
52
39
4
6
50
1.48
35476--35528
24
2.2
24
100
0
106
16
37
11
33
1.85
38983--39015
12
2.9
12
91
8
52
42
6
0
51
1.26
40279--40330
15
3.2
17
72
22
58
36
21
0
42
1.53
40352--40441
39
2.4
36
87
10
144
60
7
2
30
1.37
40361--40440
39
2.1
39
97
0
151
60
8
2
28
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40790--40819
2
15.0
2
100
0
60
50
0
0
50
1.00
41373--41442
32
2.2
32
82
7
79
48
4
1
45
1.30
41398--41443
16
2.9
15
78
12
56
50
4
0
45
1.21
43002--43044
15
2.6
17
89
10
63
58
2
9
30
1.42
51332--51395
24
2.6
25
81
18
64
65
0
1
32
1.02
51333--51392
30
2.0
31
83
9
79
63
0
1
35
1.05
56137--56324
103
1.8
103
89
5
299
31
12
16
39
1.85
59266--59332
26
2.6
26
87
0
89
52
19
7
20
1.70
63579--63615
12
3.0
12
92
4
56
18
54
16
10
1.71
63650--63712
24
2.6
26
78
16
73
55
0
0
44
0.99
63668--63707
19
2.1
19
85
0
53
55
0
0
45
0.99
63715--63744
12
2.5
12
100
0
60
6
46
26
20
1.75
69426--69472
23
2.0
24
87
4
69
40
6
6
46
1.55
70417--70462
21
2.2
21
84
7
58
6
39
4
50
1.48

Tables:   1

The End!