genome.fa.s326.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000326.1 Hibiscus syriacus cultivar Beakdansim tig00000608_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  136251

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
748--793	20	2.2	21	84	7	58	23	17	4	54	1.61
3356--3402	22	2.1	22	88	7	69	36	0	6	57	1.24
5908--5955	22	2.1	23	81	11	55	37	6	4	52	1.46
14295--14329	13	2.6	13	95	4	61	54	0	0	45	0.99
14255--14328	20	3.8	19	77	7	78	58	1	0	40	1.07
14295--14328	7	5.0	7	92	7	61	55	0	0	44	0.99
21669--21726	27	2.1	27	96	0	107	44	12	5	37	1.64
21825--21883	31	1.9	31	96	0	109	52	18	8	20	1.71
27468--27625	21	7.8	20	70	7	77	37	25	17	18	1.93
27593--27781	20	9.4	20	83	4	161	38	25	16	19	1.92
28474--28520	24	2.0	24	87	8	69	25	14	21	38	1.92
28695--28719	12	2.1	12	100	0	50	72	0	28	0	0.86
30001--30055	25	2.2	25	100	0	110	16	14	7	61	1.54
37978--38053	33	2.4	33	88	4	111	44	35	7	11	1.70
38124--38181	28	2.1	28	86	0	80	48	22	10	18	1.78
40317--40364	23	2.1	23	88	0	69	35	12	18	33	1.89
40756--40818	23	2.7	23	85	0	81	38	17	6	38	1.75
43941--43981	20	2.0	21	90	4	66	43	14	12	29	1.82
43977--44670	183	3.8	183	96	1	1232	33	16	14	36	1.89
45868--45942	3	25.0	3	79	0	78	25	34	5	34	1.79
47412--48579	198	5.9	198	98	0	2257	30	15	16	36	1.91
48698--48746	19	2.6	19	93	0	80	57	10	2	30	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50532--50597	33	2.0	33	90	0	105	22	48	0	28	1.51
50631--50695	21	3.1	21	80	6	69	15	29	15	40	1.88
52913--52955	20	2.3	18	82	17	61	18	16	11	53	1.72
52918--52964	20	2.3	20	89	10	78	17	17	10	55	1.69
53082--53127	20	2.3	20	89	10	76	17	17	10	54	1.70
53192--53639	228	2.0	227	94	2	783	39	7	8	44	1.62
64861--64992	45	3.0	45	92	2	214	25	24	21	28	1.99
69272--69342	3	23.7	3	100	0	142	67	0	0	32	0.91
77619--77644	2	13.0	2	100	0	52	50	0	0	50	1.00
78464--78519	2	28.0	2	100	0	112	50	0	0	50	1.00
85011--85151	36	4.0	35	91	0	210	18	23	24	34	1.96
85011--85151	71	2.0	71	88	2	212	18	23	24	34	1.96
86367--86415	20	2.5	20	96	0	89	36	12	14	36	1.83
94563--94608	20	2.6	18	86	13	60	39	10	26	23	1.88
94745--94825	37	2.2	38	80	13	96	50	3	1	44	1.27
95054--95251	95	2.1	95	94	0	351	35	22	16	25	1.94
98540--98566	2	13.5	2	100	0	54	48	0	0	51	1.00
100632--100675	5	9.2	5	90	9	74	61	0	0	38	0.96
100637--100676	18	2.2	18	100	0	80	62	0	0	37	0.95
100632--100670	13	2.8	13	92	7	60	61	0	0	38	0.96
105414--105489	2	38.0	2	100	0	152	50	0	0	50	1.00
109061--109096	15	2.2	17	90	9	58	50	2	2	44	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112156--112249	27	3.5	27	94	0	161	40	10	12	36	1.78
112405--112449	21	2.2	20	92	4	72	42	0	4	53	1.21
113435--113479	20	2.1	20	84	12	54	57	6	4	31	1.44
124861--124905	14	3.2	14	83	0	63	57	8	13	20	1.62
125134--125200	29	2.2	30	81	7	82	44	5	5	43	1.53
129581--129652	27	2.7	27	91	0	117	6	18	30	44	1.76
129659--129717	27	2.2	27	84	0	73	16	18	25	38	1.92
129667--129730	27	2.4	27	91	0	110	12	21	26	39	1.89

Tables:   1

The End!