Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003260.1 Hibiscus syriacus cultivar Beakdansim tig00006850_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 203219
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
File 1 of 2
Found at i:9500 original size:19 final size:18
Alignment explanation
Indices: 9476--9542 Score: 73
Period size: 19 Copynumber: 3.6 Consensus size: 18
9466 CCGGTTTTCA
*
9476 ACCGGTTCTGATCGGTTTG
1 ACCGG-TCTGAACGGTTTG
9495 ACCGGT-TCGAACTGGTTTG
1 ACCGGTCT-GAAC-GGTTTG
*
9514 ACCGGTCTGAACCAGTTTG
1 ACCGGTCTGAA-CGGTTTG
9533 ACCGGTCTGA
1 ACCGGTCTGA
9543 CCCGACCGTT
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
17 1 0.02
18 4 0.10
19 35 0.83
20 2 0.05
ACGTcount: A:0.16, C:0.24, G:0.30, T:0.30
Consensus pattern (18 bp):
ACCGGTCTGAACGGTTTG
Found at i:9568 original size:22 final size:22
Alignment explanation
Indices: 9541--9600 Score: 93
Period size: 22 Copynumber: 2.7 Consensus size: 22
9531 TGACCGGTCT
* *
9541 GACCCGACCGTTGACCCGTCCC
1 GACCCGACCGTTGACCAGACCC
9563 GACCCGACCGTTGACCAGACCC
1 GACCCGACCGTTGACCAGACCC
*
9585 GACCCGATCGTTGACC
1 GACCCGACCGTTGACC
9601 GTTGACTTTC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.18, C:0.45, G:0.23, T:0.13
Consensus pattern (22 bp):
GACCCGACCGTTGACCAGACCC
Found at i:16779 original size:20 final size:20
Alignment explanation
Indices: 16754--16832 Score: 99
Period size: 20 Copynumber: 4.0 Consensus size: 20
16744 GGCTGCTGGA
*
16754 AACCGGTT-TAACCGGTTTTC
1 AACCGGTTCGAACCGG-TTTC
16774 AACCGGTTCTG-ACCGGTTTC
1 AACCGGTTC-GAACCGGTTTC
*
16794 GACCGGTTCGAACCGGTTTC
1 AACCGGTTCGAACCGGTTTC
*
16814 GACCGGTTCGAACCGGTTT
1 AACCGGTTCGAACCGGTTT
16833 GACTGGTCTG
Statistics
Matches: 54, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
19 1 0.02
20 48 0.89
21 5 0.09
ACGTcount: A:0.16, C:0.28, G:0.27, T:0.29
Consensus pattern (20 bp):
AACCGGTTCGAACCGGTTTC
Found at i:16790 original size:10 final size:9
Alignment explanation
Indices: 16755--16835 Score: 63
Period size: 10 Copynumber: 8.2 Consensus size: 9
16745 GCTGCTGGAA
*
16755 ACCGGTTTA
1 ACCGGTTTG
*
16764 ACCGGTTTTCA
1 ACCGG-TTT-G
16775 ACCGGTTCTG
1 ACCGGTT-TG
16785 ACCGGTTTCG
1 ACCGGTTT-G
*
16795 ACCGGTTCG
1 ACCGGTTTG
16804 AACCGGTTTCG
1 -ACCGGTTT-G
*
16815 ACCGGTTCG
1 ACCGGTTTG
16824 AACCGGTTTG
1 -ACCGGTTTG
16834 AC
1 AC
16836 TGGTCTGAAC
Statistics
Matches: 60, Mismatches: 5, Indels: 14
0.76 0.06 0.18
Matches are distributed among these distances:
9 10 0.17
10 42 0.70
11 8 0.13
ACGTcount: A:0.16, C:0.28, G:0.27, T:0.28
Consensus pattern (9 bp):
ACCGGTTTG
Found at i:16791 original size:30 final size:31
Alignment explanation
Indices: 16755--16832 Score: 83
Period size: 30 Copynumber: 2.5 Consensus size: 31
16745 GCTGCTGGAA
16755 ACCGGTTTAACCGGTTTTC-AACCGG-TTCTG
1 ACCGGTTTAACCGGTTTTCGAACCGGTTTC-G
*
16785 ACCGGTTTCGACCGG--TTCGAACCGGTTTCG
1 ACCGGTTT-AACCGGTTTTCGAACCGGTTTCG
*
16815 ACCGGTTCGAACCGGTTT
1 ACCGGTT-TAACCGGTTT
16833 GACTGGTCTG
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
29 3 0.08
30 27 0.69
31 8 0.21
32 1 0.03
ACGTcount: A:0.15, C:0.28, G:0.27, T:0.29
Consensus pattern (31 bp):
ACCGGTTTAACCGGTTTTCGAACCGGTTTCG
Found at i:16878 original size:22 final size:22
Alignment explanation
Indices: 16853--16914 Score: 71
Period size: 22 Copynumber: 3.0 Consensus size: 22
16843 AACCGACCGA
16853 CCGACCCGACCCGACCGTT---
1 CCGACCCGACCCGACCGTTGAC
*
16872 --GACCCGACCCGACTGTTGAC
1 CCGACCCGACCCGACCGTTGAC
*
16892 CCGACCCGACCCAACCGTTGAC
1 CCGACCCGACCCGACCGTTGAC
16914 C
1 C
16915 GTTGACCGTT
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
17 16 0.46
22 19 0.54
ACGTcount: A:0.19, C:0.48, G:0.21, T:0.11
Consensus pattern (22 bp):
CCGACCCGACCCGACCGTTGAC
Found at i:16914 original size:17 final size:17
Alignment explanation
Indices: 16855--16902 Score: 87
Period size: 17 Copynumber: 2.8 Consensus size: 17
16845 CCGACCGACC
16855 GACCCGACCCGACCGTT
1 GACCCGACCCGACCGTT
*
16872 GACCCGACCCGACTGTT
1 GACCCGACCCGACCGTT
16889 GACCCGACCCGACC
1 GACCCGACCCGACC
16903 CAACCGTTGA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.19, C:0.48, G:0.23, T:0.10
Consensus pattern (17 bp):
GACCCGACCCGACCGTT
Found at i:30682 original size:30 final size:30
Alignment explanation
Indices: 30647--30703 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
30637 TAATGATTAT
* *
30647 TTTTAATAATTTAATGAAATTTAATAAATA
1 TTTTAATAATGTAATAAAATTTAATAAATA
*
30677 TTTTAATAATGTATTAAAATTTAATAA
1 TTTTAATAATGTAATAAAATTTAATAA
30704 TAAATTAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (30 bp):
TTTTAATAATGTAATAAAATTTAATAAATA
Found at i:30696 original size:21 final size:20
Alignment explanation
Indices: 30671--30725 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 20
30661 TGAAATTTAA
**
30671 TAAATATTTTAATAATGTAT
1 TAAATATTTTAATAATAAAT
30691 TAAA-A-TTTAATAATAAAT
1 TAAATATTTTAATAATAAAT
30709 TAATAATATTTT-ATAAT
1 T-A-AATATTTTAATAAT
30726 TTTTAGTAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
18 12 0.41
19 2 0.07
20 6 0.21
21 6 0.21
22 3 0.10
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (20 bp):
TAAATATTTTAATAATAAAT
Found at i:30726 original size:29 final size:30
Alignment explanation
Indices: 30649--30727 Score: 79
Period size: 29 Copynumber: 2.7 Consensus size: 30
30639 ATGATTATTT
* * * **
30649 TTAATAATTTAATGAAATTTAATAAATATT
1 TTAATAATATATTAAAATTTAATAAATAAA
*
30679 TTAATAATGTATTAAAATTTAAT-AATAAA
1 TTAATAATATATTAAAATTTAATAAATAAA
* *
30708 TTAATAATATTTTATAATTT
1 TTAATAATATATTAAAATTT
30728 TTAGTAAAAC
Statistics
Matches: 41, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
29 21 0.51
30 20 0.49
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.48
Consensus pattern (30 bp):
TTAATAATATATTAAAATTTAATAAATAAA
Found at i:31206 original size:18 final size:18
Alignment explanation
Indices: 31183--31225 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
31173 ACAGGTTTTA
*
31183 AGTTTTTGTGGTATTTGT
1 AGTTTTTGTGGTATTGGT
31201 AGTTTTTGTGGTATTGGT
1 AGTTTTTGTGGTATTGGT
*
31219 AGGTTTT
1 AGTTTTT
31226 AAATAATTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.12, C:0.00, G:0.30, T:0.58
Consensus pattern (18 bp):
AGTTTTTGTGGTATTGGT
Found at i:32265 original size:16 final size:16
Alignment explanation
Indices: 32244--32274 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32234 TTATTCGACA
32244 TGTTATCAACTTGACC
1 TGTTATCAACTTGACC
*
32260 TGTTATGAACTTGAC
1 TGTTATCAACTTGAC
32275 TTGTGTAGAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (16 bp):
TGTTATCAACTTGACC
Found at i:33254 original size:25 final size:24
Alignment explanation
Indices: 33160--33254 Score: 72
Period size: 26 Copynumber: 3.8 Consensus size: 24
33150 GCTATCTAAT
33160 TTTTATTTA-TTCT-AATTTATTA
1 TTTTATTTATTTCTAAATTTATTA
** *
33182 TTCTTATATTGATTT-TATCTTTTTTA
1 TT-TTAT-TT-ATTTCTAAATTTATTA
33208 TTTTACTTTATTTC-AACCATTTATTA
1 TTTTA-TTTATTTCTAA--ATTTATTA
33234 TTTTATTTATTTTCTAAATTT
1 TTTTATTTA-TTTCTAAATTT
33255 GTCTAAATTT
Statistics
Matches: 56, Mismatches: 6, Indels: 19
0.69 0.07 0.23
Matches are distributed among these distances:
22 2 0.04
23 4 0.07
24 7 0.12
25 15 0.27
26 26 0.46
27 2 0.04
ACGTcount: A:0.24, C:0.08, G:0.01, T:0.66
Consensus pattern (24 bp):
TTTTATTTATTTCTAAATTTATTA
Found at i:33491 original size:20 final size:22
Alignment explanation
Indices: 33458--33505 Score: 64
Period size: 20 Copynumber: 2.2 Consensus size: 22
33448 TTTAACTAGT
33458 TTTTCTAACCATTTA-TTAT-TA
1 TTTT-TAACCATTTATTTATCTA
*
33479 TTTTTAACTATTTATTTATCTA
1 TTTTTAACCATTTATTTATCTA
33501 TTTTT
1 TTTTT
33506 TGTATTTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 9 0.38
21 8 0.33
22 7 0.29
ACGTcount: A:0.25, C:0.10, G:0.00, T:0.65
Consensus pattern (22 bp):
TTTTTAACCATTTATTTATCTA
Found at i:34663 original size:29 final size:28
Alignment explanation
Indices: 34605--34672 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 28
34595 TTAAGCACTA
* *
34605 AAATGTAAGAAAGCTAAAATCCAAGGATCT
1 AAATGT-A-AAAGCTAAAATCAAAGAATCT
*
34635 AAATGTAAAAGTCTAAAATTAAAGAATCT
1 AAATGTAAAAG-CTAAAATCAAAGAATCT
*
34664 AAATTTAAA
1 AAATGTAAA
34673 GCTCAAGGAT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
28 4 0.12
29 23 0.70
30 6 0.18
ACGTcount: A:0.54, C:0.09, G:0.12, T:0.25
Consensus pattern (28 bp):
AAATGTAAAAGCTAAAATCAAAGAATCT
Found at i:38864 original size:53 final size:55
Alignment explanation
Indices: 38790--39023 Score: 243
Period size: 55 Copynumber: 4.4 Consensus size: 55
38780 GGAGTATGGA
* *
38790 ACTCGAATAATCTTTAACAATCGTGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
1 ACTCGAACAATCTTCAACAATCGTGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
* * *
38845 A-TC-CACAATCTTCATCAATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
1 ACTCGAACAATCTTCAACAATCGTGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
* * * *
38898 ACTCGAACAATCTCCAACGATTGTGTCTGCCCCCTATTTCTTCAGGGAGTAT-AG
1 ACTCGAACAATCTTCAACAATCGTGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
* * * * * *
38952 AACTCGAATAATCTTC-A-AAT-GGGT-TCGCTCCCTCTTTCTTTAGGGAGTAT-AG
1 -ACTCGAACAATCTTCAACAATCGTGTCT-GCCCCCTATTTCTTCAGAGAGTATAAG
39004 AACTCGAA-AATCTTCAACAA
1 -ACTCGAACAATCTTCAACAA
39024 ATGGGTTCGC
Statistics
Matches: 154, Mismatches: 19, Indels: 14
0.82 0.10 0.07
Matches are distributed among these distances:
51 8 0.05
52 35 0.23
53 50 0.32
54 7 0.05
55 54 0.35
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (55 bp):
ACTCGAACAATCTTCAACAATCGTGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
Found at i:39149 original size:51 final size:51
Alignment explanation
Indices: 38929--39279 Score: 459
Period size: 51 Copynumber: 6.8 Consensus size: 51
38919 TGTGTCTGCC
* * * * *
38929 CCCTATTTCTTCAGGGAGTATAGAACTCGAATAATCTTCAAATGGGTTCGCT
1 CCCTCTTTCTTTAAGGAGTATAGAACTCGAA-CATCTTCAAACGGGTTCGCT
* * *
38981 CCCTCTTTCTTTAGGGAGTATAGAACTCGAAAATCTTCAACAAATGGGTTCGCT
1 CCCTCTTTCTTTAAGGAGTATAGAACTCGAACATCTT---CAAACGGGTTCGCT
* * *
39035 CCCTATTTCTCTAGGGAGTATAGAACTCGAACATCTCTTCAAACGGGTTCGCT
1 CCCTCTTTCTTTAAGGAGTATAGAACTCGAACA--TCTTCAAACGGGTTCGCT
** *
39088 CATTCCTTCTTTAAGGAGTATAGAACTCGAACATCTTCAAACGGGTTCGCT
1 CCCTCTTTCTTTAAGGAGTATAGAACTCGAACATCTTCAAACGGGTTCGCT
* *
39139 CCTTCTTTCTTTAAGGAGTATAGAACTCGAACATCTTCAAATGGGTTCGCT
1 CCCTCTTTCTTTAAGGAGTATAGAACTCGAACATCTTCAAACGGGTTCGCT
* *
39190 CCCTCCTTCTTTAAGGAGTATGGAACTCGAACATCTTCAAACGGGTTCGCT
1 CCCTCTTTCTTTAAGGAGTATAGAACTCGAACATCTTCAAACGGGTTCGCT
* * *
39241 CCTTCTTTCTTTAAGGAGTATAGAACTCGCATATCTTCA
1 CCCTCTTTCTTTAAGGAGTATAGAACTCGAACATCTTCA
39280 TTTGCTTCAC
Statistics
Matches: 270, Mismatches: 24, Indels: 11
0.89 0.08 0.04
Matches are distributed among these distances:
51 153 0.57
52 29 0.11
53 40 0.15
54 44 0.16
56 4 0.01
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (51 bp):
CCCTCTTTCTTTAAGGAGTATAGAACTCGAACATCTTCAAACGGGTTCGCT
Found at i:39707 original size:36 final size:36
Alignment explanation
Indices: 39649--39878 Score: 275
Period size: 36 Copynumber: 6.4 Consensus size: 36
39639 ACTCTTCTGA
* * **
39649 GAAGGCTTAAAATGGATCTGCTTCACTACTT-TTTGGT
1 GAAGGCTTAAGATGG-TTTGCTTCACTA-TTCTCCGGT
* * *
39686 GAAGACTTAAGATGGTTTGCTTCACTACTCTCTGGT
1 GAAGGCTTAAGATGGTTTGCTTCACTATTCTCCGGT
* * *
39722 GAAGACTTATGATTGTTTGCTTCACTATTCTCCGGT
1 GAAGGCTTAAGATGGTTTGCTTCACTATTCTCCGGT
* * *
39758 GAAGGCTTCAGATTGATTGCTTCACTATTCTCCGGT
1 GAAGGCTTAAGATGGTTTGCTTCACTATTCTCCGGT
*
39794 GAAGGCTTCAGATGGTTTGCTTCACTATTCTCCGGT
1 GAAGGCTTAAGATGGTTTGCTTCACTATTCTCCGGT
* *
39830 GAAGGCTTAGGATGGTTTGCTTCACT-TCTCTTCGGT
1 GAAGGCTTAAGATGGTTTGCTTCACTAT-TCTCCGGT
39866 GAAGGCTTAAGAT
1 GAAGGCTTAAGAT
39879 TGACTTGCTC
Statistics
Matches: 172, Mismatches: 19, Indels: 5
0.88 0.10 0.03
Matches are distributed among these distances:
35 2 0.01
36 157 0.91
37 13 0.08
ACGTcount: A:0.20, C:0.19, G:0.23, T:0.37
Consensus pattern (36 bp):
GAAGGCTTAAGATGGTTTGCTTCACTATTCTCCGGT
Found at i:39817 original size:108 final size:109
Alignment explanation
Indices: 39649--39887 Score: 306
Period size: 108 Copynumber: 2.2 Consensus size: 109
39639 ACTCTTCTGA
* * **
39649 GAAGGCTTAAAATGGA-TCTGCTTCACTACTT-TTTGGTGAAGACTTAAGATGGTTTGCTTCACT
1 GAAGGCTTAAGATTGACT-TGCTTCACTA-TTCTCCGGTGAAGACTTAAGATGGTTTGCTTCACT
* * *
39712 ACTCTCTGGTGAAGACTTATGATTGTTTGCTTCACTAT-TCTCCGGT
64 ACTCTCCGGTGAAGACTTAGGATGGTTTGCTTCACT-TCTCTCCGGT
* * * *
39758 GAAGGCTTCAGATTGA-TTGCTTCACTATTCTCCGGTGAAGGCTTCAGATGGTTTGCTTCACTAT
1 GAAGGCTTAAGATTGACTTGCTTCACTATTCTCCGGTGAAGACTTAAGATGGTTTGCTTCACTAC
* *
39822 TCTCCGGTGAAGGCTTAGGATGGTTTGCTTCACTTCTCTTCGGT
66 TCTCCGGTGAAGACTTAGGATGGTTTGCTTCACTTCTCTCCGGT
39866 GAAGGCTTAAGATTGACTTGCT
1 GAAGGCTTAAGATTGACTTGCT
39888 CCAATCTCAT
Statistics
Matches: 113, Mismatches: 14, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
107 3 0.03
108 91 0.81
109 19 0.17
ACGTcount: A:0.20, C:0.19, G:0.23, T:0.37
Consensus pattern (109 bp):
GAAGGCTTAAGATTGACTTGCTTCACTATTCTCCGGTGAAGACTTAAGATGGTTTGCTTCACTAC
TCTCCGGTGAAGACTTAGGATGGTTTGCTTCACTTCTCTCCGGT
Found at i:41293 original size:125 final size:125
Alignment explanation
Indices: 41070--41447 Score: 517
Period size: 125 Copynumber: 3.0 Consensus size: 125
41060 ACTAATGTCG
* * * * *
41070 CAACATTATTTTATTCTGGTACGGGCCTTCAAAATGCCTCAAT-ATCTCAAATTATAAGGCTCAT
1 CAACATTATCTTATACTGGTACGGGCCTTCAAAATGCC-CCATCACCTCAAATTGTAAGGCTCAT
* * ** *
41134 TCTCAATGCCTTCTTGGTCTGAATCTTGTAATTTCATCATGA-GGTGGGTTCAGTCGCGCCC
65 TCTCAATGCCTTCTTCGTCTGAATCTTGTCATTTCAAAATGATGG-GGGTTCAGTCGTGCCC
*
41195 CAACATTATCTCATACTGGTACGGGCCTTCAAAATGCCCCATCACCTCAAATTGTAAGGCTCATT
1 CAACATTATCTTATACTGGTACGGGCCTTCAAAATGCCCCATCACCTCAAATTGTAAGGCTCATT
** * * *
41260 CTTGATGCCTTCTTTGTCTGAATCTTGTCATTTCAAAATGATGGGGGTTCAATCGTTCCC
66 CTCAATGCCTTCTTCGTCTGAATCTTGTCATTTCAAAATGATGGGGGTTCAGTCGTGCCC
** * * *
41320 CAACATTATCTTATAAAGGTACGGGTCTTCAAAATACCCCAACACCTCAAATTGTAAGGCTCATT
1 CAACATTATCTTATACTGGTACGGGCCTTCAAAATGCCCCATCACCTCAAATTGTAAGGCTCATT
* *
41385 CTCAATGCCTTCTTCGTCTGGATCTTGTCATTTCAAAATGATGGGGGTTCAGTCATGCCC
66 CTCAATGCCTTCTTCGTCTGAATCTTGTCATTTCAAAATGATGGGGGTTCAGTCGTGCCC
41445 CAA
1 CAA
41448 TGCGGGTATT
Statistics
Matches: 223, Mismatches: 28, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
124 3 0.01
125 218 0.98
126 2 0.01
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (125 bp):
CAACATTATCTTATACTGGTACGGGCCTTCAAAATGCCCCATCACCTCAAATTGTAAGGCTCATT
CTCAATGCCTTCTTCGTCTGAATCTTGTCATTTCAAAATGATGGGGGTTCAGTCGTGCCC
Found at i:51661 original size:136 final size:136
Alignment explanation
Indices: 51416--52135 Score: 730
Period size: 136 Copynumber: 5.3 Consensus size: 136
51406 TTCGAAGTGT
* * * *
51416 TGAACTTCTTCTCCCTCTGTCGGATAAGTTATTCTCATTATGAACCCTCCAACAAAAATGTCAAT
1 TGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATCAAAAATGTCAAT
* * * * * * * *
51481 CCCCCAAGCGAAGTGTTACTGATTCGAAGTGTTGTTAATCGAGTAATAGGTCAAACAAGTTCTTC
66 CCCTCAAGCGAGGCGTCACTGATTCAAAGTGTCGTGAATCGAGTAATAGGTCAAACAAGCTCTTC
51546 TCATTA
131 TCATTA
* * * * *
51552 TGAACTTCTTCTCCCTCTTTTGGATAAGTTATTCTCATTATGAACCCTCCATCAAAAATGTCAAT
1 TGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATCAAAAATGTCAAT
* * * * * **
51617 CCCTCAAGCGAGGCGT-AGCTGATTCAAAGTGTTGCGAATTGAGTAATAGGTCGAATAATTTCTT
66 CCCTCAAGCGAGGCGTCA-CTGATTCAAAGTGTCGTGAATCGAGTAATAGGTCAAACAAGCTCTT
51681 CTCATTA
130 CTCATTA
* * *** *
51688 TGAACTTCTTCTCCATCTGTCGGATGAGTTCTTTTCATTATGAACTCTCCATTTGAAATGTTAAT
1 TGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATCAAAAATGTCAAT
* * *
51753 CCCTCAAGCGAGGCGTCACTGATTCAAAATGTCGTGAACCGAG-AGAAAGGTCGAAA-AAGCTCT
66 CCCTCAAGCGAGGCGTCACTGATTCAAAGTGTCGTGAATCGAGTA-ATAGGTC-AAACAAGCTCT
51816 TCTCATTA
129 TCTCATTA
* * * *** *
51824 TGAATTTCTTCTCCCTCTATCGGATGAGTTCTTCTCATTATGAACTCTTCATTTGAAATGTTAAT
1 TGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATCAAAAATGTCAAT
* ** * *
51889 CCCTCAAGCGAGGTGTCACTGATTCGAAA-TAACGTGAATCGAGTGATAGGTCGAACAAGCTCTT
66 CCCTCAAGCGAGGCGTCACTGATTC-AAAGTGTCGTGAATCGAGTAATAGGTCAAACAAGCTCTT
*
51953 ATCATTA
130 CTCATTA
* *** *
51960 TGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAGCTCTCCATTTGAAATGTTAAT
1 TGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATCAAAAATGTCAAT
* ** * * * * *** * ** * *
52025 CCCTTAAATGAGGCATCAGTGATTCAAAAT-ACTGTGAATCGAACGATAGATTGAGCAAGCTTTT
66 CCCTCAAGCGAGGCGTCACTGATTCAAAGTGTC-GTGAATCGAGTAATAGGTCAAACAAGCTCTT
*
52089 CCCATTA
130 CTCATTA
* * *
52096 TGAACTTCCTCTCCCTCAGTCAGATGAGTTCTTCTCATTA
1 TGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTA
52136 CTCTTCATTG
Statistics
Matches: 508, Mismatches: 67, Indels: 18
0.86 0.11 0.03
Matches are distributed among these distances:
135 9 0.02
136 493 0.97
137 6 0.01
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.34
Consensus pattern (136 bp):
TGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATCAAAAATGTCAAT
CCCTCAAGCGAGGCGTCACTGATTCAAAGTGTCGTGAATCGAGTAATAGGTCAAACAAGCTCTTC
TCATTA
Found at i:51913 original size:272 final size:272
Alignment explanation
Indices: 51416--52135 Score: 806
Period size: 272 Copynumber: 2.6 Consensus size: 272
51406 TTCGAAGTGT
* * * **** *
51416 TGAACTTCTTCTCCCTCTGTCGGATAAGTTATTCTCATTATGAACCCTCCAACAAAAATGTCAAT
1 TGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAATGTTAAT
* * * * * * * * *
51481 CCCCCAAGCGAAGTGTTACTGATTCGAAGTGTTGTTAATCGAGTA-ATAGGTC-AAACAAGTTCT
66 CCCTCAAGCGAGGCGTCACTGATTCAAAATGTCGTGAATCGAG-AGATAGGTCGAAA-AAGCTCT
* * * *
51544 TCTCATTATGAACTTCTTCTCCCTCTTTTGGATAAGTTATTCTCATTATGAACCCTCCATCAAAA
129 TCTCATTATGAACTTCTTCTCCCTCTATCGGATGAGTTCTTCTCATTATGAACCCTCCATCAAAA
*** * *
51609 ATGTCAATCCCTCAAGCGAGGCGTAGCTGATTC-AAAGTGTTGCGAATTGAGTAATAGGTCGAAT
194 ATGTCAATCCCTCAAGCGAGGCGTAGCTGATTCGAAA-TAACGCGAATCGAGTAATAGGTCGAAC
** *
51673 AATTTCTTCTCATTA
258 AAGCTCTTATCATTA
* *
51688 TGAACTTCTTCTCCATCTGTCGGATGAGTTCTTTTCATTATGAACTCTCCATTTGAAATGTTAAT
1 TGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAATGTTAAT
* *
51753 CCCTCAAGCGAGGCGTCACTGATTCAAAATGTCGTGAACCGAGAGAAAGGTCGAAAAAGCTCTTC
66 CCCTCAAGCGAGGCGTCACTGATTCAAAATGTCGTGAATCGAGAGATAGGTCGAAAAAGCTCTTC
* * * ***
51818 TCATTATGAATTTCTTCTCCCTCTATCGGATGAGTTCTTCTCATTATGAACTCTTCATTTGAAAT
131 TCATTATGAACTTCTTCTCCCTCTATCGGATGAGTTCTTCTCATTATGAACCCTCCATCAAAAAT
* * * *
51883 GTTAATCCCTCAAGCGAGGTGTCA-CTGATTCGAAATAACGTGAATCGAGTGATAGGTCGAACAA
196 GTCAATCCCTCAAGCGAGGCGT-AGCTGATTCGAAATAACGCGAATCGAGTAATAGGTCGAACAA
51947 GCTCTTATCATTA
260 GCTCTTATCATTA
*
51960 TGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAGCTCTCCATTTGAAATGTTAAT
1 TGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAATGTTAAT
* ** * * * * * ** *
52025 CCCTTAAATGAGGCATCAGTGATTCAAAAT-ACTGTGAATCGA-ACGATAGATTGAGCAAGCTTT
66 CCCTCAAGCGAGGCGTCACTGATTCAAAATGTC-GTGAATCGAGA-GATAGGTCGAAAAAGCTCT
* * *
52088 TCCCATTATGAACTTCCTCTCCCTC-AGTCAGATGAGTTCTTCTCATTA
129 TCTCATTATGAACTTCTTCTCCCTCTA-TCGGATGAGTTCTTCTCATTA
52136 CTCTTCATTG
Statistics
Matches: 378, Mismatches: 63, Indels: 14
0.83 0.14 0.03
Matches are distributed among these distances:
271 4 0.01
272 367 0.97
273 7 0.02
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.34
Consensus pattern (272 bp):
TGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAATGTTAAT
CCCTCAAGCGAGGCGTCACTGATTCAAAATGTCGTGAATCGAGAGATAGGTCGAAAAAGCTCTTC
TCATTATGAACTTCTTCTCCCTCTATCGGATGAGTTCTTCTCATTATGAACCCTCCATCAAAAAT
GTCAATCCCTCAAGCGAGGCGTAGCTGATTCGAAATAACGCGAATCGAGTAATAGGTCGAACAAG
CTCTTATCATTA
Found at i:52820 original size:41 final size:42
Alignment explanation
Indices: 52775--52869 Score: 106
Period size: 42 Copynumber: 2.3 Consensus size: 42
52765 TTATGGGAGG
* *
52775 CCCGAAGGACTTT-TCATCTTGCTCAAAAGACTTA-TAGATGA
1 CCCGAAGGACTTTAGCATCATGCTCAAAAGACTTACT-GATGA
* *
52816 CCCGAAGGA-TTTAAGCATCATGTTCAAAAGACTTACTGATGG
1 CCCGAAGGACTTT-AGCATCATGCTCAAAAGACTTACTGATGA
*
52858 CCCGAATGACTT
1 CCCGAAGGACTT
52870 AAGCTGATTC
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
40 3 0.07
41 9 0.20
42 30 0.67
43 3 0.07
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (42 bp):
CCCGAAGGACTTTAGCATCATGCTCAAAAGACTTACTGATGA
Found at i:53273 original size:226 final size:226
Alignment explanation
Indices: 52775--53322 Score: 848
Period size: 226 Copynumber: 2.4 Consensus size: 226
52765 TTATGGGAGG
* * * *
52775 CCCGAAGGACTTTTCATCTTGCTCAAAAGACTTATAGATGACCCGAAGGATTTAAGCATCATGTT
1 CCCGAAAGACTTATCATCTTGCTCAAAAGACTTATAGATGACCCGAAGGATTTAAGAATCATGAT
* * * *
52840 CAAAAGACTTACTGATGGCCCGAATGACTTAAGCTGATTCGAAATGACGTGAATCGACAAATAAA
66 CGAAAGACTTACTGATGGCCCTAAGGACTTAAGCTGATTCGAAATGACGTGAATCGACAAAGAAA
* *
52905 ATGTTAACACCTCTGGTGGGGCGTTGCTGATTCGAAGTGTTGTGAATCGAGAAAAGGAAATGTTG
131 ATGTTAACACCTCTGGTGGGGCGTTGCTGATTCGAACTGTTGTGAATCGAGAAAAGGAAATATTG
* *
52970 TAAACATCGTGCCCAAAGGTCTTATGGATGG
196 TAAACATCCTGCCCAAAGGTCTTATGGATGA
* * * *
53001 CCTGAATGACTTATCATCTTGCTCGAAAGACTTATAGATGACCCGAAGGATTTAAGAATCATGCT
1 CCCGAAAGACTTATCATCTTGCTCAAAAGACTTATAGATGACCCGAAGGATTTAAGAATCATGAT
* *
53066 CGAAAGACTTACTGATGGCCCTAAGGACTTAAGCTGATTCGAAATGTCGTGAATCGAGCAAAGGA
66 CGAAAGACTTACTGATGGCCCTAAGGACTTAAGCTGATTCGAAATGACGTGAATCGA-CAAAGAA
* *
53131 AATGTTAACCCCTCTGGTGGGGCGTTGCTGATTCGAACTGTTGTGAATCGAGCAAAGGAAATATT
130 AATGTTAACACCTCTGGTGGGGCGTTGCTGATTCGAACTGTTGTGAATCGAGAAAAGGAAATATT
*
53196 GTAAACATCCTGCCCAAATGTCTTATGGATGA
195 GTAAACATCCTGCCCAAAGGTCTTATGGATGA
* * *
53228 CCCGAAAGACTTATCATCTTGCTCAAAAG-CTTATAAATAACCCGAAGGATTTAAGTATCATGAT
1 CCCGAAAGACTTATCATCTTGCTCAAAAGACTTATAGATGACCCGAAGGATTTAAGAATCATGAT
53292 CGAAAGACTTACTGATGG-CCTGAAGGACTTA
66 CGAAAGACTTACTGATGGCCCT-AAGGACTTA
53323 CTCATCAAGA
Statistics
Matches: 294, Mismatches: 26, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
225 3 0.01
226 170 0.58
227 121 0.41
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.27
Consensus pattern (226 bp):
CCCGAAAGACTTATCATCTTGCTCAAAAGACTTATAGATGACCCGAAGGATTTAAGAATCATGAT
CGAAAGACTTACTGATGGCCCTAAGGACTTAAGCTGATTCGAAATGACGTGAATCGACAAAGAAA
ATGTTAACACCTCTGGTGGGGCGTTGCTGATTCGAACTGTTGTGAATCGAGAAAAGGAAATATTG
TAAACATCCTGCCCAAAGGTCTTATGGATGA
Found at i:55425 original size:4 final size:4
Alignment explanation
Indices: 55412--55472 Score: 79
Period size: 4 Copynumber: 14.8 Consensus size: 4
55402 ATCTGTTTTA
*
55412 TTTC -TTC TTTC TTTC TTTTC TATTT TTTC TTTC TTTC TTTC TTTC TTTTC
1 TTTC TTTC TTTC TTTC -TTTC T-TTC TTTC TTTC TTTC TTTC TTTC -TTTC
55462 TTTC TTTC TTT
1 TTTC TTTC TTT
55473 TTCTCTCTTT
Statistics
Matches: 51, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
3 3 0.06
4 37 0.73
5 11 0.22
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTC
Found at i:55435 original size:22 final size:22
Alignment explanation
Indices: 55410--55473 Score: 96
Period size: 22 Copynumber: 3.0 Consensus size: 22
55400 TGATCTGTTT
*
55410 TATTTCTTCTTTCTTTCTTTTC
1 TATTTTTTCTTTCTTTCTTTTC
55432 TATTTTTTCTTTCTTTC-TTTC
1 TATTTTTTCTTTCTTTCTTTTC
55453 T-TTCTTTTCTTTCTTTCTTTT
1 TATT-TTTTCTTTCTTTCTTTT
55474 TCTCTCTTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
20 2 0.05
21 18 0.46
22 19 0.49
ACGTcount: A:0.03, C:0.20, G:0.00, T:0.77
Consensus pattern (22 bp):
TATTTTTTCTTTCTTTCTTTTC
Found at i:55444 original size:13 final size:12
Alignment explanation
Indices: 55407--55474 Score: 75
Period size: 13 Copynumber: 5.4 Consensus size: 12
55397 ATTTGATCTG
55407 TTTTATTTC-TTC
1 TTTT-TTTCTTTC
*
55419 TTTCTTTCTTTTC
1 TTTTTTTC-TTTC
55432 TATTTTTTCTTTC
1 T-TTTTTTCTTTC
*
55445 TTTCTTTCTTTC
1 TTTTTTTCTTTC
55457 TTTTCTTTCTTTC
1 TTTT-TTTCTTTC
55470 TTTTT
1 TTTTT
55475 CTCTCTTTTG
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
11 4 0.08
12 17 0.35
13 21 0.44
14 6 0.12
ACGTcount: A:0.03, C:0.19, G:0.00, T:0.78
Consensus pattern (12 bp):
TTTTTTTCTTTC
Found at i:55452 original size:30 final size:28
Alignment explanation
Indices: 55407--55482 Score: 100
Period size: 29 Copynumber: 2.7 Consensus size: 28
55397 ATTTGATCTG
*
55407 TTTTATTTCTTCTTTCTTTCTTTTCTATT
1 TTTTCTTTCTTCTTTCTTTCTTTTCT-TT
55436 TTTTCTTTCTTTCTTTCTTTCTTTTCTTT
1 TTTTCTTTC-TTCTTTCTTTCTTTTCTTT
* *
55465 CTTTCTTT-TTCTCTCTTT
1 TTTTCTTTCTTCTTTCTTT
55483 TGTGTGTTCT
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
27 9 0.21
29 17 0.40
30 17 0.40
ACGTcount: A:0.03, C:0.21, G:0.00, T:0.76
Consensus pattern (28 bp):
TTTTCTTTCTTCTTTCTTTCTTTTCTTT
Found at i:55456 original size:25 final size:26
Alignment explanation
Indices: 55407--55472 Score: 93
Period size: 25 Copynumber: 2.6 Consensus size: 26
55397 ATTTGATCTG
*
55407 TTTTATTTC-TTCTTTCTTTCTTTTC
1 TTTTCTTTCTTTCTTTCTTTCTTTTC
55432 TATTT-TTTCTTTCTTTCTTTC-TTTC
1 T-TTTCTTTCTTTCTTTCTTTCTTTTC
55457 TTTTCTTTCTTTCTTT
1 TTTTCTTTCTTTCTTT
55473 TTCTCTCTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
24 3 0.08
25 21 0.55
26 14 0.37
ACGTcount: A:0.03, C:0.20, G:0.00, T:0.77
Consensus pattern (26 bp):
TTTTCTTTCTTTCTTTCTTTCTTTTC
Found at i:56875 original size:20 final size:22
Alignment explanation
Indices: 56850--56898 Score: 75
Period size: 20 Copynumber: 2.3 Consensus size: 22
56840 AATGCAAAAA
*
56850 ATGCAAAGATGC-ACATGT-AG
1 ATGCAAAGATGCAAAATGTGAG
56870 ATGCAAAGATGCAAAATGTGAG
1 ATGCAAAGATGCAAAATGTGAG
56892 ATGCAAA
1 ATGCAAA
56899 TGCAACAAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
20 12 0.46
21 5 0.19
22 9 0.35
ACGTcount: A:0.45, C:0.12, G:0.24, T:0.18
Consensus pattern (22 bp):
ATGCAAAGATGCAAAATGTGAG
Found at i:59019 original size:15 final size:15
Alignment explanation
Indices: 58969--59032 Score: 51
Period size: 15 Copynumber: 4.3 Consensus size: 15
58959 TTTTAAGGAT
*
58969 TAAAATGTAAGAAAGC
1 TAAAATGTAAG-AATC
** *
58985 TAAAATCCAAGGATC
1 TAAAATGTAAGAATC
59000 T-AAATGTAA-AAGTC
1 TAAAATGTAAGAA-TC
*
59014 TAAAATTTAAGAATC
1 TAAAATGTAAGAATC
59029 TAAA
1 TAAA
59033 TTTAAAGCTT
Statistics
Matches: 37, Mismatches: 8, Indels: 7
0.71 0.15 0.13
Matches are distributed among these distances:
13 1 0.03
14 9 0.24
15 16 0.43
16 11 0.30
ACGTcount: A:0.53, C:0.09, G:0.12, T:0.25
Consensus pattern (15 bp):
TAAAATGTAAGAATC
Found at i:59029 original size:29 final size:28
Alignment explanation
Indices: 58971--59038 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 28
58961 TTAAGGATTA
*
58971 AAATGTAAGAAAGCTAAAATCCAAGGATCT
1 AAATGT-A-AAAGCTAAAATCCAAGAATCT
**
59001 AAATGTAAAAGTCTAAAATTTAAGAATCT
1 AAATGTAAAAG-CTAAAATCCAAGAATCT
*
59030 AAATTTAAA
1 AAATGTAAA
59039 GCTTAAGGAC
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
28 4 0.12
29 23 0.70
30 6 0.18
ACGTcount: A:0.53, C:0.09, G:0.12, T:0.26
Consensus pattern (28 bp):
AAATGTAAAAGCTAAAATCCAAGAATCT
Found at i:60780 original size:30 final size:30
Alignment explanation
Indices: 60745--60801 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
60735 TAATGATTAT
* *
60745 TTTTAATAATTTAATGAAATTTAATAAATA
1 TTTTAATAATGTAATAAAATTTAATAAATA
*
60775 TTTTAATAATGTATTAAAATTTAATAA
1 TTTTAATAATGTAATAAAATTTAATAA
60802 TAAATTAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (30 bp):
TTTTAATAATGTAATAAAATTTAATAAATA
Found at i:60794 original size:21 final size:20
Alignment explanation
Indices: 60769--60823 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 20
60759 TGAAATTTAA
**
60769 TAAATATTTTAATAATGTAT
1 TAAATATTTTAATAATAAAT
60789 TAAA-A-TTTAATAATAAAT
1 TAAATATTTTAATAATAAAT
60807 TAATAATATTTT-ATAAT
1 T-A-AATATTTTAATAAT
60824 TTTTAGTAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
18 12 0.41
19 2 0.07
20 6 0.21
21 6 0.21
22 3 0.10
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (20 bp):
TAAATATTTTAATAATAAAT
Found at i:60824 original size:29 final size:30
Alignment explanation
Indices: 60747--60825 Score: 79
Period size: 29 Copynumber: 2.7 Consensus size: 30
60737 ATGATTATTT
* * * **
60747 TTAATAATTTAATGAAATTTAATAAATATT
1 TTAATAATATATTAAAATTTAATAAATAAA
*
60777 TTAATAATGTATTAAAATTTAAT-AATAAA
1 TTAATAATATATTAAAATTTAATAAATAAA
* *
60806 TTAATAATATTTTATAATTT
1 TTAATAATATATTAAAATTT
60826 TTAGTAAAAC
Statistics
Matches: 41, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
29 21 0.51
30 20 0.49
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.48
Consensus pattern (30 bp):
TTAATAATATATTAAAATTTAATAAATAAA
Found at i:61304 original size:18 final size:18
Alignment explanation
Indices: 61281--61323 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
61271 ACAGGTTTTA
*
61281 AGTTTTTGTGGTATTTGT
1 AGTTTTTGTGGTATTGGT
61299 AGTTTTTGTGGTATTGGT
1 AGTTTTTGTGGTATTGGT
*
61317 AGGTTTT
1 AGTTTTT
61324 AAATAATTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.12, C:0.00, G:0.30, T:0.58
Consensus pattern (18 bp):
AGTTTTTGTGGTATTGGT
Found at i:62367 original size:16 final size:16
Alignment explanation
Indices: 62346--62376 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
62336 TTATTCGACA
62346 TGTTATCAACTTGACC
1 TGTTATCAACTTGACC
*
62362 TGTTATGAACTTGAC
1 TGTTATCAACTTGAC
62377 TTGTGTAGAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (16 bp):
TGTTATCAACTTGACC
Found at i:63357 original size:25 final size:24
Alignment explanation
Indices: 63263--63357 Score: 72
Period size: 26 Copynumber: 3.8 Consensus size: 24
63253 GCTATCTAAT
63263 TTTTATTTA-TTCT-AATTTATTA
1 TTTTATTTATTTCTAAATTTATTA
** *
63285 TTCTTATATTGATTT-TATCTTTTTTA
1 TT-TTAT-TT-ATTTCTAAATTTATTA
63311 TTTTACTTTATTTC-AACCATTTATTA
1 TTTTA-TTTATTTCTAA--ATTTATTA
63337 TTTTATTTATTTTCTAAATTT
1 TTTTATTTA-TTTCTAAATTT
63358 GTCTAAATTT
Statistics
Matches: 56, Mismatches: 6, Indels: 19
0.69 0.07 0.23
Matches are distributed among these distances:
22 2 0.04
23 4 0.07
24 7 0.12
25 15 0.27
26 26 0.46
27 2 0.04
ACGTcount: A:0.24, C:0.08, G:0.01, T:0.66
Consensus pattern (24 bp):
TTTTATTTATTTCTAAATTTATTA
Found at i:63458 original size:17 final size:18
Alignment explanation
Indices: 63424--63461 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
63414 AATCAATCCG
**
63424 TTTATTTTTTTTCATTAA
1 TTTATTTTACTTCATTAA
63442 TTTATTTTACTTC-TTAA
1 TTTATTTTACTTCATTAA
63459 TTT
1 TTT
63462 GTTAGCTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.21, C:0.08, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTATTTTACTTCATTAA
Found at i:63587 original size:21 final size:22
Alignment explanation
Indices: 63563--63610 Score: 55
Period size: 20 Copynumber: 2.2 Consensus size: 22
63553 TTTAACTAGT
63563 TTTTCTAACCATTGA-TTAT-TA
1 TTTT-TAACCATTGATTTATCTA
* *
63584 TTTTTAACTATTTATTTATCTA
1 TTTTTAACCATTGATTTATCTA
63606 TTTTT
1 TTTTT
63611 TGTATTTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 8 0.35
21 8 0.35
22 7 0.30
ACGTcount: A:0.25, C:0.10, G:0.02, T:0.62
Consensus pattern (22 bp):
TTTTTAACCATTGATTTATCTA
Found at i:64779 original size:28 final size:27
Alignment explanation
Indices: 64712--64778 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 27
64702 TTAAGCACTA
*
64712 AAATGTAAGAAAGCTAAAATCCAAGATCT
1 AAATGT-A-AAAGCTAAAATCAAAGATCT
*
64741 AAATGTAAAAGTCTAAAATTAAAGAATCT
1 AAATGTAAAAG-CTAAAATCAAAG-ATCT
*
64770 AAATTTAAA
1 AAATGTAAA
64779 GCTCAAGGAT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
27 4 0.12
28 11 0.33
29 18 0.55
ACGTcount: A:0.55, C:0.09, G:0.10, T:0.25
Consensus pattern (27 bp):
AAATGTAAAAGCTAAAATCAAAGATCT
Found at i:67275 original size:136 final size:136
Alignment explanation
Indices: 67031--67750 Score: 716
Period size: 136 Copynumber: 5.3 Consensus size: 136
67021 TTCGAAGTGT
* * *
67031 TGAACTTCTTCTCCCTCTGTCGGATAAGTTATTCTCATTACGAACCCTCCA-ACAAAAATGTCAA
1 TGAACTTCTTCTCCCTCTGTCGGATAAGTTCTTCTCATTATGAACCCTCCATAC-GAAATGTCAA
* * * * * * * * *
67095 TCCCCCAAGCGATGTGTTACTGATTCGAAGTGTTGTTAATCGAGTAATAGGTCAAACAAGTTCTT
65 TCCCTCAAGCGAGGCGTCACTGATTCAAAGTGTCGTGAATCGAGTAATAGGTCGAACAAGCTCTT
67160 CTCATTA
130 CTCATTA
* * * *
67167 TGAACTTCTTCTCCCTCTTTTGGATAAGTTATTCTCAATATGAACCCTCCA-ACGAAAATGTCAA
1 TGAACTTCTTCTCCCTCTGTCGGATAAGTTCTTCTCATTATGAACCCTCCATACG-AAATGTCAA
* * * **
67231 TCCCTCAAGCGAGGCGT-AGCTGATTCAAAGTGTTGCGAATCGAGTAATAGGTCGAATAATTTCT
65 TCCCTCAAGCGAGGCGTCA-CTGATTCAAAGTGTCGTGAATCGAGTAATAGGTCGAACAAGCTCT
67295 TCTCATTA
129 TCTCATTA
* * * ** *
67303 TGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTTTCATTATGAACTCTCCATTTGAAATGTTAAT
1 TGAACTTCTTCTCCCTCTGTCGGATAAGTTCTTCTCATTATGAACCCTCCATACGAAATGTCAAT
* * *
67368 CCCTCAAGCGAGGCGTCACTGATTCAAAATGTCGTGAACCGAG-AGAAAGGTCGAACAAGCTCTT
66 CCCTCAAGCGAGGCGTCACTGATTCAAAGTGTCGTGAATCGAGTA-ATAGGTCGAACAAGCTCTT
67432 CTCATTA
130 CTCATTA
* * * * ** *
67439 TGAATTTCTTCTCCCTCTATCGGATGAA-TTCTTCTCATTATGAACTCTTCATTTGAAATGTTAA
1 TGAACTTCTTCTCCCTCTGTCGGAT-AAGTTCTTCTCATTATGAACCCTCCATACGAAATGTCAA
* ** *
67503 TCCCTCAAGCGAGGTGTCACTGATTCGAAA-TACCGTGAATCGAGTGATAGGTCGAACAAGCTCT
65 TCCCTCAAGCGAGGCGTCACTGATTC-AAAGTGTCGTGAATCGAGTAATAGGTCGAACAAGCTCT
*
67567 TATCATTA
129 TCTCATTA
* * * ** *
67575 TGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAGCTCTCCATTTGAAATGTTAAT
1 TGAACTTCTTCTCCCTCTGTCGGATAAGTTCTTCTCATTATGAACCCTCCATACGAAATGTCAAT
* * ** * * * * *** * * *
67640 GCCTTAAATGAGGCATCAGTGATTCAAAAT-ACTGTGAATCGAACGATAGATCGAGCAAGCTTTT
66 CCCTCAAGCGAGGCGTCACTGATTCAAAGTGTC-GTGAATCGAGTAATAGGTCGAACAAGCTCTT
*
67704 CCCATTA
130 CTCATTA
* * * * *
67711 TGAACTTCCTCTCTCTCAGTCAGATGAGTTCTTCTCATTA
1 TGAACTTCTTCTCCCTCTGTCGGATAAGTTCTTCTCATTA
67751 CTCTTCATTG
Statistics
Matches: 505, Mismatches: 68, Indels: 22
0.85 0.11 0.04
Matches are distributed among these distances:
135 7 0.01
136 492 0.97
137 6 0.01
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (136 bp):
TGAACTTCTTCTCCCTCTGTCGGATAAGTTCTTCTCATTATGAACCCTCCATACGAAATGTCAAT
CCCTCAAGCGAGGCGTCACTGATTCAAAGTGTCGTGAATCGAGTAATAGGTCGAACAAGCTCTTC
TCATTA
Found at i:67528 original size:272 final size:272
Alignment explanation
Indices: 67031--67750 Score: 790
Period size: 272 Copynumber: 2.6 Consensus size: 272
67021 TTCGAAGTGT
* * * * **** *
67031 TGAACTTCTTCTCCCTCTGTCGGATAAGTTATTCTCATTACGAACCCTCCAACAAAAATGTCAAT
1 TGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAATGTTAAT
* * * * * * * * * *
67096 CCCCCAAGCGATGTGTTACTGATTCGAAGTGTTGTTAATCGAGTA-ATAGGTCAAACAAGTTCTT
66 CCCTCAAGCGAGGCGTCACTGATTCAAAATGTCGTGAATCGAG-AGATAGGTCGAACAAGCTCTT
* * * *
67160 CTCATTATGAACTTCTTCTCCCTCTTTTGGAT-AAGTTATTCTCAATATGAACCCTCCAACGAAA
130 CTCATTATGAACTTCTTCTCCCTCTATCGGATGAA-TTCTTCTCATTATGAACCCTCCAACGAAA
*** *
67224 ATGTCAATCCCTCAAGCGAGGCGTAGCTGATTC-AAAGTGTTGCGAATCGAGTAATAGGTCGAAT
194 ATGTCAATCCCTCAAGCGAGGCGTAGCTGATTCGAAA-TACCGCGAATCGAGTAATAGGTCGAAC
** *
67288 AATTTCTTCTCATTA
258 AAGCTCTTATCATTA
*
67303 TGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTTTCATTATGAACTCTCCATTTGAAATGTTAAT
1 TGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAATGTTAAT
* *
67368 CCCTCAAGCGAGGCGTCACTGATTCAAAATGTCGTGAACCGAGAGAAAGGTCGAACAAGCTCTTC
66 CCCTCAAGCGAGGCGTCACTGATTCAAAATGTCGTGAATCGAGAGATAGGTCGAACAAGCTCTTC
* * * **
67433 TCATTATGAATTTCTTCTCCCTCTATCGGATGAATTCTTCTCATTATGAACTCTTCATTTG-AAA
131 TCATTATGAACTTCTTCTCCCTCTATCGGATGAATTCTTCTCATTATGAACCCTCCA-ACGAAAA
* * * *
67497 TGTTAATCCCTCAAGCGAGGTGTCA-CTGATTCGAAATACCGTGAATCGAGTGATAGGTCGAACA
195 TGTCAATCCCTCAAGCGAGGCGT-AGCTGATTCGAAATACCGCGAATCGAGTAATAGGTCGAACA
67561 AGCTCTTATCATTA
259 AGCTCTTATCATTA
*
67575 TGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAGCTCTCCATTTGAAATGTTAAT
1 TGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAATGTTAAT
* * ** * * * * * *
67640 GCCTTAAATGAGGCATCAGTGATTCAAAAT-ACTGTGAATCGA-ACGATAGATCGAGCAAGCTTT
66 CCCTCAAGCGAGGCGTCACTGATTCAAAATGTC-GTGAATCGAGA-GATAGGTCGAACAAGCTCT
* * * * *
67703 TCCCATTATGAACTTCCTCTCTCTC-AGTCAGATGAGTTCTTCTCATTA
129 TCTCATTATGAACTTCTTCTCCCTCTA-TCGGATGAATTCTTCTCATTA
67751 CTCTTCATTG
Statistics
Matches: 378, Mismatches: 62, Indels: 16
0.83 0.14 0.04
Matches are distributed among these distances:
271 4 0.01
272 367 0.97
273 7 0.02
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (272 bp):
TGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAATGTTAAT
CCCTCAAGCGAGGCGTCACTGATTCAAAATGTCGTGAATCGAGAGATAGGTCGAACAAGCTCTTC
TCATTATGAACTTCTTCTCCCTCTATCGGATGAATTCTTCTCATTATGAACCCTCCAACGAAAAT
GTCAATCCCTCAAGCGAGGCGTAGCTGATTCGAAATACCGCGAATCGAGTAATAGGTCGAACAAG
CTCTTATCATTA
Found at i:68825 original size:227 final size:226
Alignment explanation
Indices: 68346--68926 Score: 848
Period size: 226 Copynumber: 2.6 Consensus size: 226
68336 TAGAAAATCA
* ** * * *
68346 ATTGGAAACATCCCACCC-AATGACTTATGGGA-GGCCCGAAGGACTTTTCATCTTGCTCG-AAG
1 ATTGTAAACATCCTGCCCAAATGTCTTAT-GGATGGCCCGAAAGACTTATCATCTTGCTCGAAAG
* * * * *
68408 ACTTATAGATGACCCGAAGGATTTAAGCATCATGTTCAAAAGACTTACTGATGGCCCGAATGACT
65 ACTTATAGATGACCCGAAGGATTTAAGAATCATGATCGAAAGACTTACTGATGGCCCTAAGGACT
* *
68473 TAAGCTGATTCGAAATGACGTGAATCGACAAATGAAATGTTAACACCTCTGGTTGGGCGTTGCTG
130 TAAGCTGATTCGAAATGACGTGAATCGACAAAGGAAATGTTAACACCTCTGGTGGGGCGTTGCTG
*
68538 ATTCGAAGTGTTGTGAATCGAGAAAAGGAAAT
195 ATTCGAACTGTTGTGAATCGAGAAAAGGAAAT
* * * * *
68570 GTTGTAAACATCGTGCCCAAAGGTCTTATGGATGGCCTGAATGACTTATCATCTTGCTCGAAAGA
1 ATTGTAAACATCCTGCCCAAATGTCTTATGGATGGCCCGAAAGACTTATCATCTTGCTCGAAAGA
*
68635 CTTATAGATGACCCGAAGGATTTAAGAATCATGCTCGAAAGACTTACTGATGGCCCTAAGGACTT
66 CTTATAGATGACCCGAAGGATTTAAGAATCATGATCGAAAGACTTACTGATGGCCCTAAGGACTT
* *
68700 AAGCTGATTCGAAATGTCGTGAATCGAGCAAAGGAAATGTTAACCCCTCTGGTGGGGCGTTGCTG
131 AAGCTGATTCGAAATGACGTGAATCGA-CAAAGGAAATGTTAACACCTCTGGTGGGGCGTTGCTG
*
68765 ATTCGAACTGTTGTGAATCGAGCAAAGGAAAT
195 ATTCGAACTGTTGTGAATCGAGAAAAGGAAAT
* *
68797 ATTGTAAACATCCTGCCCAAATGTCTTATGGATGACCCGAAAGACTTATCATCTTGCTCAAAAG-
1 ATTGTAAACATCCTGCCCAAATGTCTTATGGATGGCCCGAAAGACTTATCATCTTGCTCGAAAGA
* * *
68861 CTTATAAATAACCCGAAGGATTTAAGTATCATGATCGAAAGACTTACTGATGG-CCTGAAGGACT
66 CTTATAGATGACCCGAAGGATTTAAGAATCATGATCGAAAGACTTACTGATGGCCCT-AAGGACT
68925 TA
130 TA
68927 CTCATCAAGA
Statistics
Matches: 320, Mismatches: 32, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
224 16 0.05
225 35 0.11
226 148 0.46
227 121 0.38
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.27
Consensus pattern (226 bp):
ATTGTAAACATCCTGCCCAAATGTCTTATGGATGGCCCGAAAGACTTATCATCTTGCTCGAAAGA
CTTATAGATGACCCGAAGGATTTAAGAATCATGATCGAAAGACTTACTGATGGCCCTAAGGACTT
AAGCTGATTCGAAATGACGTGAATCGACAAAGGAAATGTTAACACCTCTGGTGGGGCGTTGCTGA
TTCGAACTGTTGTGAATCGAGAAAAGGAAAT
Found at i:75631 original size:108 final size:109
Alignment explanation
Indices: 75441--76134 Score: 930
Period size: 108 Copynumber: 6.3 Consensus size: 109
75431 CTCCATAGTC
* * *
75441 CTTCAGAGAGTATAAGACTCGAACAATCTTTAGCAATCGCGTATG-CCCCTATTTCTTCAGAGAG
1 CTTCAGAGAGTATAAGACTC-AACAATCTTCAACAATCGCGTCTGCCCCCTATTTCTTCAGAGAG
* ** * * *
75505 TATAAGACTCGAATAATCTTCATTGATCACGTCTGCCCCCCATTT
65 TATAAGACTCGAACAATCTTCAACGATCGCGTCCGCCCCCTATTT
* *
75550 CTTCAGAGAGTATAAGACTC-ACAATCTTCATCAATCGCGTCTGCCCCCTATTTCGTCAGAGAGT
1 CTTCAGAGAGTATAAGACTCAACAATCTTCAACAATCGCGTCTGCCCCCTATTTCTTCAGAGAGT
*
75614 ATAAGACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTT
66 ATAAGACTCGAACAATCTTCAACGATCGCGTCCGCCCCCTATTT
* * * *
75658 CTTCAGAGAGTATAAGAC-CCACAATCTTCATCAATCGCGTCTTCCCCCTATTTCTTCATAGAGT
1 CTTCAGAGAGTATAAGACTCAACAATCTTCAACAATCGCGTCTGCCCCCTATTTCTTCAGAGAGT
*
75722 ATAAGACTCGAACAATCTTCAACGATCGCGTCCGCCCTCTATTT
66 ATAAGACTCGAACAATCTTCAACGATCGCGTCCGCCCCCTATTT
* * * ** *
75766 CTTCAGAGAGTATAAGACCCGAACAATCTTCAGCAATCGTGTCCACCCCCCTATTTCCTCAGAGA
1 CTTCAGAGAGTATAAGACTC-AACAATCTTCAACAATCGCGT-CTGCCCCCTATTTCTTCAGAGA
*
75831 GTATAAGACTCGAACAATCTTCAACTATCGCGTCTC-CCCCCTATTT
64 GTATAAGACTCGAACAATCTTCAACGATCGCGTC-CGCCCCCTATTT
** * * * *
75877 CTTCAGATTGTATAAGACTTGAACAATCTTCAACGATAGCGTCCGCCCCCTATTTCTTCAGAGAG
1 CTTCAGAGAGTATAAGAC-TCAACAATCTTCAACAATCGCGTCTGCCCCCTATTTCTTCAGAGAG
* * *
75942 TATGAGACTTGAACAATCTTCAACGATCGTGTCCGCCCCCTATTT
65 TATAAGACTCGAACAATCTTCAACGATCGCGTCCGCCCCCTATTT
* *
75987 CCTCAGAGAGTATAAGACTCGAACAATCTTCAACTATCGCGTCT-CCCCCTATTTCTTCAGAGAG
1 CTTCAGAGAGTATAAGACTC-AACAATCTTCAACAATCGCGTCTGCCCCCTATTTCTTCAGAGAG
* *
76051 TATAAGACTTGAACAATCTTCAACGATCGCGTCCGCCCCCTATTC
65 TATAAGACTCGAACAATCTTCAACGATCGCGTCCGCCCCCTATTT
* * *
76096 CTTCAGAGAGTATGAGACTTGAACAATCTTCAACGATCG
1 CTTCAGAGAGTATAAGAC-TCAACAATCTTCAACAATCG
76135 TGGGGAACCT
Statistics
Matches: 523, Mismatches: 52, Indels: 20
0.88 0.09 0.03
Matches are distributed among these distances:
107 21 0.04
108 177 0.34
109 118 0.23
110 113 0.22
111 93 0.18
112 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (109 bp):
CTTCAGAGAGTATAAGACTCAACAATCTTCAACAATCGCGTCTGCCCCCTATTTCTTCAGAGAGT
ATAAGACTCGAACAATCTTCAACGATCGCGTCCGCCCCCTATTT
Found at i:75650 original size:55 final size:55
Alignment explanation
Indices: 75441--76134 Score: 941
Period size: 55 Copynumber: 12.7 Consensus size: 55
75431 CTCCATAGTC
* * * *
75441 CTTCAGAGAGTATAAGACTCGAACAATCTTTAGCAATCGCGTATG-CCCCTATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTT
* ** * *
75495 CTTCAGAGAGTATAAGACTCGAATAATCTTCATTGATCACGTCTGCCCCCCATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTT
* *
75550 CTTCAGAGAGTATAAGACTC--ACAATCTTCATCAATCGCGTCTGCCCCCTATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTT
*
75603 CGTCAGAGAGTATAAGACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTT
* * * *
75658 CTTCAGAGAGTATAAGAC-C-CACAATCTTCATCAATCGCGTCTTCCCCCTATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTT
* * *
75711 CTTCATAGAGTATAAGACTCGAACAATCTTCAACGATCGCGTCCGCCCTCTATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTT
* * * * **
75766 CTTCAGAGAGTATAAGACCCGAACAATCTTCAGCAATCGTGTCCACCCCCCTATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACGATCGCGT-CTGCCCCCTATTT
* * *
75822 CCTCAGAGAGTATAAGACTCGAACAATCTTCAACTATCGCGTCTCCCCCCTATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTT
** * * *
75877 CTTCAGATTGTATAAGACTTGAACAATCTTCAACGATAGCGTCCGCCCCCTATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTT
* * * *
75932 CTTCAGAGAGTATGAGACTTGAACAATCTTCAACGATCGTGTCCGCCCCCTATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTT
* *
75987 CCTCAGAGAGTATAAGACTCGAACAATCTTCAACTATCGCGTCT-CCCCCTATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTT
* * *
76041 CTTCAGAGAGTATAAGACTTGAACAATCTTCAACGATCGCGTCCGCCCCCTATTC
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTT
* *
76096 CTTCAGAGAGTATGAGACTTGAACAATCTTCAACGATCG
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACGATCG
76135 TGGGGAACCT
Statistics
Matches: 566, Mismatches: 67, Indels: 13
0.88 0.10 0.02
Matches are distributed among these distances:
53 94 0.17
54 90 0.16
55 335 0.59
56 47 0.08
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (55 bp):
CTTCAGAGAGTATAAGACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTT
Found at i:75875 original size:219 final size:218
Alignment explanation
Indices: 75441--76134 Score: 921
Period size: 219 Copynumber: 3.2 Consensus size: 218
75431 CTCCATAGTC
* * *
75441 CTTCAGAGAGTATAAGACTCGAACAATCTTTAGCAATCGCGT-ATGCCCCTATTTCTTCAGAGAG
1 CTTCAGAGAGTATAAGACTC-AACAATCTTCAACAATCGCGTCATCCCCCTATTTCTTCAGAGAG
* ** * * *
75505 TATAAGACTCGAATAATCTTCATTGATCACGTCTGCCCCCCATTTCTTCAGAGAGTATAAGACTC
65 TATAAGACTCGAACAATCTTCAACGATCGCGTCCGCCCCCTATTTCTTCAGAGAGTATAAGACTC
* * *
75570 --ACAATCTTCATCAATCGCGTCTGCCCCCTATTTCGTCAGAGAGTATAAGACTCGAACAATCTT
130 GAACAATCTTCAACAATCGCGTC-CCCCCCTATTTCCTCAGAGAGTATAAGACTCGAACAATCTT
*
75633 CAACGATCGCGTCTGCCCCCTATTT
194 CAACGATCGCGTCTCCCCCCTATTT
* * * *
75658 CTTCAGAGAGTATAAGAC-CCACAATCTTCATCAATCGCGTCTTCCCCCTATTTCTTCATAGAGT
1 CTTCAGAGAGTATAAGACTCAACAATCTTCAACAATCGCGTCATCCCCCTATTTCTTCAGAGAGT
* *
75722 ATAAGACTCGAACAATCTTCAACGATCGCGTCCGCCCTCTATTTCTTCAGAGAGTATAAGACCCG
66 ATAAGACTCGAACAATCTTCAACGATCGCGTCCGCCCCCTATTTCTTCAGAGAGTATAAGACTCG
* *
75787 AACAATCTTCAGCAATCGTGTCCACCCCCCTATTTCCTCAGAGAGTATAAGACTCGAACAATCTT
131 AACAATCTTCAACAATCGCGT-C-CCCCCCTATTTCCTCAGAGAGTATAAGACTCGAACAATCTT
*
75852 CAACTATCGCGTCTCCCCCCTATTT
194 CAACGATCGCGTCTCCCCCCTATTT
** * * * **
75877 CTTCAGATTGTATAAGACTTGAACAATCTTCAACGATAGCGTCCGCCCCCTATTTCTTCAGAGAG
1 CTTCAGAGAGTATAAGAC-TCAACAATCTTCAACAATCGCGTCATCCCCCTATTTCTTCAGAGAG
* * * *
75942 TATGAGACTTGAACAATCTTCAACGATCGTGTCCGCCCCCTATTTCCTCAGAGAGTATAAGACTC
65 TATAAGACTCGAACAATCTTCAACGATCGCGTCCGCCCCCTATTTCTTCAGAGAGTATAAGACTC
* * * *
76007 GAACAATCTTCAACTATCGCGTCTCCCCCTATTTCTTCAGAGAGTATAAGACTTGAACAATCTTC
130 GAACAATCTTCAACAATCGCGTCCCCCCCTATTTCCTCAGAGAGTATAAGACTCGAACAATCTTC
*
76072 AACGATCGCGTC-CGCCCCCTATTC
195 AACGATCGCGTCTC-CCCCCTATTT
* * *
76096 CTTCAGAGAGTATGAGACTTGAACAATCTTCAACGATCG
1 CTTCAGAGAGTATAAGAC-TCAACAATCTTCAACAATCG
76135 TGGGGAACCT
Statistics
Matches: 421, Mismatches: 49, Indels: 12
0.87 0.10 0.02
Matches are distributed among these distances:
215 18 0.04
216 77 0.18
217 18 0.04
218 19 0.05
219 173 0.41
220 1 0.00
221 115 0.27
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (218 bp):
CTTCAGAGAGTATAAGACTCAACAATCTTCAACAATCGCGTCATCCCCCTATTTCTTCAGAGAGT
ATAAGACTCGAACAATCTTCAACGATCGCGTCCGCCCCCTATTTCTTCAGAGAGTATAAGACTCG
AACAATCTTCAACAATCGCGTCCCCCCCTATTTCCTCAGAGAGTATAAGACTCGAACAATCTTCA
ACGATCGCGTCTCCCCCCTATTT
Found at i:77166 original size:21 final size:21
Alignment explanation
Indices: 77142--77185 Score: 72
Period size: 20 Copynumber: 2.1 Consensus size: 21
77132 TTTTCATTCA
*
77142 TTTTTTATTTTTTTA-TTATT
1 TTTTTTATTTTTTCACTTATT
77162 TTTTTTATTTTTTCACTTATT
1 TTTTTTATTTTTTCACTTATT
77183 TTT
1 TTT
77186 CTTCTTCTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 14 0.64
21 8 0.36
ACGTcount: A:0.14, C:0.05, G:0.00, T:0.82
Consensus pattern (21 bp):
TTTTTTATTTTTTCACTTATT
Found at i:77181 original size:12 final size:10
Alignment explanation
Indices: 77118--77185 Score: 54
Period size: 9 Copynumber: 6.8 Consensus size: 10
77108 TCTTGAACCC
77118 TTATTTTTTCA
1 TTATTTTTT-A
* *
77129 TT-GTTTTCA
1 TTATTTTTTA
77138 TTCATTTTTTA
1 TT-ATTTTTTA
77149 -T-TTTTTTA
1 TTATTTTTTA
77157 TTATTTTTT-
1 TTATTTTTTA
77166 TTATTTTTTCA
1 TTATTTTTT-A
77177 CTTATTTTT
1 -TTATTTTT
77186 CTTCTTCTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 13
0.73 0.06 0.21
Matches are distributed among these distances:
8 7 0.15
9 13 0.28
10 11 0.24
11 7 0.15
12 8 0.17
ACGTcount: A:0.15, C:0.07, G:0.01, T:0.76
Consensus pattern (10 bp):
TTATTTTTTA
Found at i:87715 original size:136 final size:135
Alignment explanation
Indices: 87467--88185 Score: 651
Period size: 136 Copynumber: 5.3 Consensus size: 135
87457 AGCATCTACA
* * * * *
87467 GAACTTTTTCTCCCTCTGTCGGATAAGTTCTTCTCATTATGAACCCTTCA-ACGAAAATATCAAT
1 GAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACCCTCCATTCG-AAATGTCAAT
* * ** * * *
87531 CCCTCAAGTGAAGCGTTGCTTATTCGAAGTGTTGTTAATCGAGTAATAGGT-GAAACAAGTTATT
65 CCCTCAAGCGAGGCGTCACTGATTC-AAATGTTGTGAATCGAGTAATAGGTCG-AACAAGTTATT
87595 CTCATTAT
128 CTCATTAT
* * * * *
87603 GAACTTCTTCTCCCTCTTTTGGATGAGTTATTCTCATTATGAACCCACCA-TCGAAAATGCCAAT
1 GAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACCCTCCATTCG-AAATGTCAAT
* * * *
87667 CCCTCAAGCGAGGCGT-AGCTAATTCAAAGTGTTGTGAATCGAGCAATAGGTCGAATAAGTTCTT
65 CCCTCAAGCGAGGCGTCA-CTGATTCAAA-TGTTGTGAATCGAGTAATAGGTCGAACAAGTTATT
87731 CTCATTAT
128 CTCATTAT
* * ** * *
87739 GAACTTATTCTCCCTCTGTTGGATGAGTTCTTCTCATTATGAATTCTCCATTTGAAATGTTAATC
1 GAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACCCTCCATTCGAAATGTCAATC
** * * *
87804 CCTCAAGCGAGGCGTCACTGATTCGAAATGTCATGAACCGAG-AGATAGGTCGAACAAACTCA-T
66 CCTCAAGCGAGGCGTCACTGATTC-AAATGTTGTGAATCGAGTA-ATAGGTCGAAC-AAGTTATT
87867 CTCATTAT
128 CTCATTAT
* * ** * * *
87875 GAACTTCTTCTCCTTCTATCAAATGAGTTCTTCTCATTATGAACTCTCCATTTGAAATGTTAATC
1 GAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACCCTCCATTCGAAATGTCAATC
* * ** * * * * *
87940 CCTCAAGCGAGGCGTCACTGGTTTGAAATACTGTGAATCGAGTGATAGGTCGAACATGCTCTTAT
66 CCTCAAGCGAGGCGTCACT-GATTCAAATGTTGTGAATCGAGTAATAGGTCGAACAAGTTATTCT
*
88005 TATTAT
130 CATTAT
* * * * *
88011 GAACTTCTTCTCCCTCTGTCGGATGACTTCTTCTCATTATGAACTCTCCATTTGAAATTTTAATC
1 GAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACCCTCCATTCGAAATGTCAATC
* *** *** * * * *
88076 CCAT-AAGCGAGGTGTCACTGATTCAAAATACCGTGAATCGAACGATAGGTTGATCAAGCTCTTC
66 CC-TCAAGCGAGGCGTCACTGATTC-AAATGTTGTGAATCGAGTAATAGGTCGAACAAGTTATTC
88140 TCATTAT
129 TCATTAT
* * ** *
88147 GAACTTCCTCTCCCTCAGTTAGATGAGTTCTTATCATTA
1 GAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTA
88186 CTCTTTATTG
Statistics
Matches: 489, Mismatches: 81, Indels: 26
0.82 0.14 0.04
Matches are distributed among these distances:
135 7 0.01
136 468 0.96
137 14 0.03
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (135 bp):
GAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACCCTCCATTCGAAATGTCAATC
CCTCAAGCGAGGCGTCACTGATTCAAATGTTGTGAATCGAGTAATAGGTCGAACAAGTTATTCTC
ATTAT
Found at i:87977 original size:272 final size:272
Alignment explanation
Indices: 87594--88185 Score: 728
Period size: 272 Copynumber: 2.2 Consensus size: 272
87584 AACAAGTTAT
* * *
87594 TCTCATTATGAACTTCTTCTCCCTCTTTTGGATGAGTTATTCTCATTATGAACCCACCATCGAAA
1 TCTCATTATGAACTTCTTCTCCCTCTATTAGATGAGTTCTTCTCATTATGAACCCACCATCGAAA
** *
87659 ATGCCAATCCCTCAAGCGAGGCGTAGCTAATTCAAAGTGTTGTGAATCGAGCAATAGGTCGAATA
66 ATGCCAATCCCTCAAGCGAGGCGTAGCTAATTCAAAGTACTGTGAATCGAGCAATAGGTCGAACA
* * * * *
87724 AGTTCTTCTCATTATGAACTTATTCTCCCTCTGTTGGATGAGTTCTTCTCATTATGAATTCTCCA
131 AGCTCTTATCATTATGAACTTATTCTCCCTCTGTCGGATGACTTCTTCTCATTATGAACTCTCCA
* **
87789 TTTGAAATGTTAATCCC-TCAAGCGAGGCGTCACTGATTCGAAATGTCATGAACCGAGA-GATAG
196 TTTGAAATGTTAATCCCAT-AAGCGAGGCGTCACTGATTCAAAATACCATGAACCGA-ACGATAG
87852 GTCGAACAAACTCA
259 GTCGAACAAACTCA
* * * * * *
87866 TCTCATTATGAACTTCTTCTCCTTCTATCAAATGAGTTCTTCTCATTATGAACTCTCCATTTG-A
1 TCTCATTATGAACTTCTTCTCCCTCTATTAGATGAGTTCTTCTCATTATGAACCCACCA-TCGAA
** ** * **
87930 AATGTTAATCCCTCAAGCGAGGCGTCA-CTGGTTTGAAA-TACTGTGAATCGAGTGATAGGTCGA
65 AATGCCAATCCCTCAAGCGAGGCGT-AGCT-AATTCAAAGTACTGTGAATCGAGCAATAGGTCGA
* * *
87993 ACATGCTCTTATTATTATGAACTTCTTCTCCCTCTGTCGGATGACTTCTTCTCATTATGAACTCT
128 ACAAGCTCTTATCATTATGAACTTATTCTCCCTCTGTCGGATGACTTCTTCTCATTATGAACTCT
* * * *
88058 CCATTTGAAATTTTAATCCCATAAGCGAGGTGTCACTGATTCAAAATACCGTGAATCGAACGATA
193 CCATTTGAAATGTTAATCCCATAAGCGAGGCGTCACTGATTCAAAATACCATGAACCGAACGATA
* * * *
88123 GGTTGATCAAGCTCT
258 GGTCGAACAAACTCA
* *
88138 TCTCATTATGAACTTCCTCTCCCTC-AGTTAGATGAGTTCTTATCATTA
1 TCTCATTATGAACTTCTTCTCCCTCTA-TTAGATGAGTTCTTCTCATTA
88186 CTCTTTATTG
Statistics
Matches: 271, Mismatches: 43, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
271 2 0.01
272 260 0.96
273 9 0.03
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.34
Consensus pattern (272 bp):
TCTCATTATGAACTTCTTCTCCCTCTATTAGATGAGTTCTTCTCATTATGAACCCACCATCGAAA
ATGCCAATCCCTCAAGCGAGGCGTAGCTAATTCAAAGTACTGTGAATCGAGCAATAGGTCGAACA
AGCTCTTATCATTATGAACTTATTCTCCCTCTGTCGGATGACTTCTTCTCATTATGAACTCTCCA
TTTGAAATGTTAATCCCATAAGCGAGGCGTCACTGATTCAAAATACCATGAACCGAACGATAGGT
CGAACAAACTCA
Found at i:89041 original size:42 final size:42
Alignment explanation
Indices: 88980--89064 Score: 118
Period size: 42 Copynumber: 2.0 Consensus size: 42
88970 AATTACTTAT
* *
88980 CATCTTGCTCGAAAGACTTA-TAGATGGCCCGAAAGATTTAAG
1 CATCATGCTCGAAAGACTTACTA-ATGGCCCGAAAGACTTAAG
* *
89022 CATCATGCTCGAAAGACTTACTAATGGCTCGAAGGACTTAAG
1 CATCATGCTCGAAAGACTTACTAATGGCCCGAAAGACTTAAG
89064 C
1 C
89065 TTATTTGAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
42 36 0.95
43 2 0.05
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (42 bp):
CATCATGCTCGAAAGACTTACTAATGGCCCGAAAGACTTAAG
Found at i:89053 original size:20 final size:20
Alignment explanation
Indices: 88986--89061 Score: 66
Period size: 20 Copynumber: 3.7 Consensus size: 20
88976 TTATCATCTT
88986 GCTCGAAAGACTTA-TAGATG
1 GCTCGAAAGACTTACTA-ATG
* * *
89006 GCCCGAAAGATTTAAGCATCAT-
1 GCTCGAAAGACTT-A-C-TAATG
89028 GCTCGAAAGACTTACTAATG
1 GCTCGAAAGACTTACTAATG
*
89048 GCTCGAAGGACTTA
1 GCTCGAAAGACTTA
89062 AGCTTATTTG
Statistics
Matches: 44, Mismatches: 7, Indels: 10
0.72 0.11 0.16
Matches are distributed among these distances:
19 3 0.07
20 25 0.57
21 2 0.05
22 11 0.25
23 2 0.05
24 1 0.02
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (20 bp):
GCTCGAAAGACTTACTAATG
Found at i:89057 original size:168 final size:168
Alignment explanation
Indices: 88768--89102 Score: 494
Period size: 168 Copynumber: 2.0 Consensus size: 168
88758 AATCAATTGG
* *
88768 AAACATCCTGCCTGAAGGTCTTATGGGTCGCCCGAAGGACTTATCAACTTTCTCGAAAGACTTAT
1 AAACATCCTGCCTGAAGGTCTTATGGATCGCCCGAAGGACTTATCAACTTGCTCGAAAGACTTAT
* * * *
88833 AGATGACCTGAAGGATTTAAGCATTATGCTCAAAAGACTTACTGATGGCCCGAAGGACTTAAGCT
66 AGATGACCCGAAAGATTTAAGCATCATGCTCAAAAGACTTACTAATGGCCCGAAGGACTTAAGCT
88898 GATTCGAAATG-CAGTGAATCGAAC-AAAGGAAATGTTAT
131 GATTCGAAATGTC-GTGAATC-AACTAAAGGAAATGTTAT
* * ** *
88936 AAACATCCTGCCTGAAGGTCTTATGGATGGTCCGAATTACTTATCATCTTGCTCGAAAGACTTAT
1 AAACATCCTGCCTGAAGGTCTTATGGATCGCCCGAAGGACTTATCAACTTGCTCGAAAGACTTAT
* * *
89001 AGATGGCCCGAAAGATTTAAGCATCATGCTCGAAAGACTTACTAATGGCTCGAAGGACTTAAGCT
66 AGATGACCCGAAAGATTTAAGCATCATGCTCAAAAGACTTACTAATGGCCCGAAGGACTTAAGCT
* *
89066 TATTTGAAATGTCGTGAATCAACTAAAGGAAATGTTA
131 GATTCGAAATGTCGTGAATCAACTAAAGGAAATGTTA
89103 ACCCCTCTGG
Statistics
Matches: 149, Mismatches: 16, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
167 3 0.02
168 145 0.97
169 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (168 bp):
AAACATCCTGCCTGAAGGTCTTATGGATCGCCCGAAGGACTTATCAACTTGCTCGAAAGACTTAT
AGATGACCCGAAAGATTTAAGCATCATGCTCAAAAGACTTACTAATGGCCCGAAGGACTTAAGCT
GATTCGAAATGTCGTGAATCAACTAAAGGAAATGTTAT
Found at i:89227 original size:41 final size:41
Alignment explanation
Indices: 89182--89288 Score: 99
Period size: 42 Copynumber: 2.6 Consensus size: 41
89172 GCACAAATGT
** * *
89182 CTTATAGATGGCCCGAAGGACTTATTATCTTGCTTAAAAGA
1 CTTATAGATGGCCCGAAGGACTTAGCATCATGCTCAAAAGA
* ** * *
89223 CTTATAAATAACCCGAAGGATTTAAGCATCATGCTCGAAAGA
1 CTTATAGATGGCCCGAAGGACTT-AGCATCATGCTCAAAAGA
*
89265 CTTACT-GATGGCCCAAAGGACTTA
1 CTTA-TAGATGGCCCGAAGGACTTA
89289 CTCATAAAGA
Statistics
Matches: 50, Mismatches: 14, Indels: 4
0.74 0.21 0.06
Matches are distributed among these distances:
41 20 0.40
42 29 0.58
43 1 0.02
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.27
Consensus pattern (41 bp):
CTTATAGATGGCCCGAAGGACTTAGCATCATGCTCAAAAGA
Found at i:91388 original size:11 final size:11
Alignment explanation
Indices: 91374--91417 Score: 52
Period size: 11 Copynumber: 3.6 Consensus size: 11
91364 ATGTTTTATA
91374 TCTTTTTTCTT
1 TCTTTTTTCTT
91385 TCTTTTTTCTATTTT
1 TCTTTTTTC----TT
91400 TCTTTTTTCTT
1 TCTTTTTTCTT
91411 TCTTTTT
1 TCTTTTT
91418 CTCTATTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
11 18 0.62
15 11 0.38
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82
Consensus pattern (11 bp):
TCTTTTTTCTT
Found at i:91401 original size:19 final size:17
Alignment explanation
Indices: 91374--91427 Score: 63
Period size: 19 Copynumber: 2.9 Consensus size: 17
91364 ATGTTTTATA
91374 TCTTTTTTCTTTCTTTTT
1 TCTTTTTTCTTT-TTTTT
91392 TCTATTTTTCTTTTTTCTT
1 TCT-TTTTTCTTTTTT-TT
*
91411 TCTTTTTCTCTATTTTT
1 TCTTTTT-TCTTTTTTT
91428 GTGTGTTATT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
18 11 0.34
19 21 0.66
ACGTcount: A:0.04, C:0.17, G:0.00, T:0.80
Consensus pattern (17 bp):
TCTTTTTTCTTTTTTTT
Found at i:91406 original size:26 final size:27
Alignment explanation
Indices: 91374--91427 Score: 101
Period size: 26 Copynumber: 2.0 Consensus size: 27
91364 ATGTTTTATA
91374 TCTTTTTTCTTTCTTTTT-TCTATTTT
1 TCTTTTTTCTTTCTTTTTCTCTATTTT
91400 TCTTTTTTCTTTCTTTTTCTCTATTTT
1 TCTTTTTTCTTTCTTTTTCTCTATTTT
91427 T
1 T
91428 GTGTGTTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 18 0.67
27 9 0.33
ACGTcount: A:0.04, C:0.17, G:0.00, T:0.80
Consensus pattern (27 bp):
TCTTTTTTCTTTCTTTTTCTCTATTTT
Found at i:91439 original size:26 final size:26
Alignment explanation
Indices: 91384--91440 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
91374 TCTTTTTTCT
* * *
91384 TTCTTTTTTCTATTTTTCTTTTTTCT
1 TTCTTTTTTCTATTTTTCTGTGTTCA
*
91410 TTCTTTTTCTCTATTTTTGTGTGTT-A
1 TTCTTTTT-TCTATTTTTCTGTGTTCA
91436 TTCTT
1 TTCTT
91441 ACTATATCTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 13 0.50
27 13 0.50
ACGTcount: A:0.05, C:0.14, G:0.05, T:0.75
Consensus pattern (26 bp):
TTCTTTTTTCTATTTTTCTGTGTTCA
Found at i:93364 original size:29 final size:31
Alignment explanation
Indices: 93312--93372 Score: 81
Period size: 30 Copynumber: 2.0 Consensus size: 31
93302 CAATAAGACC
93312 AGACAAAAAAAAATCAATAGTAGTAGAAATG
1 AGACAAAAAAAAATCAATAGTAGTAGAAATG
* * *
93343 AGAC-AAAAAGAATCAAT-TTAGTTGAAATG
1 AGACAAAAAAAAATCAATAGTAGTAGAAATG
93372 A
1 A
93373 TTAGTCAAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 11 0.41
30 12 0.44
31 4 0.15
ACGTcount: A:0.57, C:0.07, G:0.16, T:0.20
Consensus pattern (31 bp):
AGACAAAAAAAAATCAATAGTAGTAGAAATG
Found at i:94782 original size:25 final size:25
Alignment explanation
Indices: 94752--94801 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
94742 TATATTAATT
*
94752 TAAAATCTAAAATTTAAGGAAAATC
1 TAAAATCTAAAACTTAAGGAAAATC
* * *
94777 TAAAATTTAAAGCTTAAGGATAATC
1 TAAAATCTAAAACTTAAGGAAAATC
94802 AAATAAATCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.52, C:0.08, G:0.10, T:0.30
Consensus pattern (25 bp):
TAAAATCTAAAACTTAAGGAAAATC
Found at i:96695 original size:20 final size:18
Alignment explanation
Indices: 96670--96706 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
96660 TTAATGAAAT
96670 TTAATAAATATTTGAATAAG
1 TTAATAAA-ATTT-AATAAG
96690 TTAATAAAATTTAATAA
1 TTAATAAAATTTAATAA
96707 TAAATTTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 4 0.24
20 8 0.47
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (18 bp):
TTAATAAAATTTAATAAG
Found at i:96826 original size:39 final size:37
Alignment explanation
Indices: 96778--96947 Score: 164
Period size: 39 Copynumber: 4.5 Consensus size: 37
96768 TTTTGAAAGC
* *
96778 ATATATAATATATAATTTTCAAAAACGTTTTCAAAACAT
1 ATATATAATATATAGTTTT-AAAAACATTTT-AAAACAT
* * * *
96817 TTATATAATATATAGTGTTAAAAATATTTTGAAA-AT
1 ATATATAATATATAGTTTTAAAAACATTTTAAAACAT
* *
96853 ATATATAATATATAGTTTTTGAAAACATCTTGAAAACAT
1 ATATATAATATATAG-TTTTAAAAACAT-TTTAAAACAT
* * *
96892 ATATATAATATATAGTTTTTGAAAATATTTTGAAA-AT
1 ATATATAATATATAG-TTTTAAAAACATTTTAAAACAT
* *
96929 GTATATAATATACAGTTTT
1 ATATATAATATATAGTTTT
96948 TGAAAATATA
Statistics
Matches: 111, Mismatches: 17, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
36 20 0.18
37 27 0.24
38 19 0.17
39 45 0.41
ACGTcount: A:0.46, C:0.05, G:0.07, T:0.42
Consensus pattern (37 bp):
ATATATAATATATAGTTTTAAAAACATTTTAAAACAT
Found at i:96847 original size:75 final size:75
Alignment explanation
Indices: 96742--96940 Score: 233
Period size: 75 Copynumber: 2.7 Consensus size: 75
96732 CCAGGGTGTT
* **
96742 ATTTA-AT-ATATATAGTATATATAAA-ATTTTGAAAGCATATATAATATATAATTTTCAAAAAC
1 ATTTATATAATATATAGTAT-TAAAAATATTTTGAAAATATATATAATATATAATTTTCAAAAAC
* *
96804 GTTTTCAAAAC
65 ATCTTCAAAAC
* * **
96815 ATTTATATAATATATAGTGTTAAAAATATTTTGAAAATATATATAATATATAGTTTTTGAAAACA
1 ATTTATATAATATATAGTATTAAAAATATTTTGAAAATATATATAATATATAATTTTCAAAAACA
*
96880 TCTTGAAAAC
66 TCTTCAAAAC
* * * *
96890 ATATATATAATATATAGTTTTTGAAAATATTTTGAAAATGTATATAATATA
1 ATTTATATAATATATAG-TATTAAAAATATTTTGAAAATATATATAATATA
96941 CAGTTTTTGA
Statistics
Matches: 108, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
73 5 0.05
74 7 0.06
75 66 0.61
76 30 0.28
ACGTcount: A:0.47, C:0.04, G:0.07, T:0.42
Consensus pattern (75 bp):
ATTTATATAATATATAGTATTAAAAATATTTTGAAAATATATATAATATATAATTTTCAAAAACA
TCTTCAAAAC
Found at i:96948 original size:26 final size:22
Alignment explanation
Indices: 96919--96975 Score: 71
Period size: 21 Copynumber: 2.5 Consensus size: 22
96909 TTTGAAAATA
96919 TTTTGAAAATGTATATAATATACAGT
1 TTTTGAAAAT-TATAT-ATAT--AGT
96945 TTTTGAAAA-TATATATATAGT
1 TTTTGAAAATTATATATATAGT
96966 TTTTGAAAAT
1 TTTTGAAAAT
96976 ATTTGTAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
21 12 0.40
23 4 0.13
24 5 0.17
26 9 0.30
ACGTcount: A:0.42, C:0.02, G:0.11, T:0.46
Consensus pattern (22 bp):
TTTTGAAAATTATATATATAGT
Found at i:96954 original size:37 final size:37
Alignment explanation
Indices: 96767--96956 Score: 202
Period size: 37 Copynumber: 5.1 Consensus size: 37
96757 TATATATAAA
** * ** *
96767 ATTTTGAAAGCATATATAATATATAATTTTCAAAAAC
1 ATTTTGAAAATATATATAATATATAGTTTTTGAAAAT
* * * * *
96804 GTTTTCAAAACATTTATATAATATATAG-TGTTAAAAAT
1 ATTTT-GAAA-ATATATATAATATATAGTTTTTGAAAAT
*
96842 ATTTTGAAAATATATATAATATATAGTTTTTGAAAAC
1 ATTTTGAAAATATATATAATATATAGTTTTTGAAAAT
*
96879 ATCTTGAAAACATATATATAATATATAGTTTTTGAAAAT
1 ATTTTG-AAA-ATATATATAATATATAGTTTTTGAAAAT
* *
96918 ATTTTGAAAATGTATATAATATACAGTTTTTGAAAAT
1 ATTTTGAAAATATATATAATATATAGTTTTTGAAAAT
96955 AT
1 AT
96957 ATATATAGTT
Statistics
Matches: 128, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
36 16 0.12
37 47 0.37
38 20 0.16
39 45 0.35
ACGTcount: A:0.46, C:0.05, G:0.08, T:0.42
Consensus pattern (37 bp):
ATTTTGAAAATATATATAATATATAGTTTTTGAAAAT
Found at i:96977 original size:19 final size:21
Alignment explanation
Indices: 96931--96977 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
96921 TTGAAAATGT
96931 ATATAATATACAGTTTTTGAAA
1 ATAT-ATATACAGTTTTTGAAA
*
96953 ATATATATATAGTTTTTGAAA
1 ATATATATACAGTTTTTGAAA
96974 ATAT
1 ATAT
96978 TTGTAATATA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.45, C:0.02, G:0.09, T:0.45
Consensus pattern (21 bp):
ATATATATACAGTTTTTGAAA
Found at i:96986 original size:26 final size:24
Alignment explanation
Indices: 96919--96989 Score: 67
Period size: 21 Copynumber: 2.9 Consensus size: 24
96909 TTTGAAAATA
* *
96919 TTTTGAAAATGTATATAATATACAGT
1 TTTTGAAAA--TATTTAATATATAGT
96945 TTTTGAAAATA--T-ATATATAGT
1 TTTTGAAAATATTTAATATATAGT
96966 TTTTGAAAATATTTGTAATATATA
1 TTTTGAAAATA-TT-TAATATATA
96990 TATATATACA
Statistics
Matches: 39, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
21 19 0.49
22 1 0.03
24 2 0.05
25 1 0.03
26 16 0.41
ACGTcount: A:0.42, C:0.01, G:0.10, T:0.46
Consensus pattern (24 bp):
TTTTGAAAATATTTAATATATAGT
Found at i:97031 original size:26 final size:28
Alignment explanation
Indices: 96991--97048 Score: 93
Period size: 26 Copynumber: 2.1 Consensus size: 28
96981 TAATATATAT
96991 ATATATACATAATATAGTTTTTGAAAAC
1 ATATATACATAATATAGTTTTTGAAAAC
*
97019 ATATATA-AT-ATATAGTTTTTGAAAAT
1 ATATATACATAATATAGTTTTTGAAAAC
97045 ATAT
1 ATAT
97049 TGTTGAAAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
26 20 0.69
27 2 0.07
28 7 0.24
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.43
Consensus pattern (28 bp):
ATATATACATAATATAGTTTTTGAAAAC
Found at i:97413 original size:65 final size:63
Alignment explanation
Indices: 97294--97529 Score: 226
Period size: 64 Copynumber: 3.7 Consensus size: 63
97284 TTTTTCAGAG
* * * * * **
97294 TGATGCACCGATGCACCAATCCATGCATCGATGCACCATGAATTAAATTG-AACATCGAATGCAT
1 TGATGCATCGATGCA-C-ATCCATGCACCGATGCACTAAGGA-TATTTTGAAACATCGAATGCAT
97358 T
63 T
*
97359 TCATGCATCGATGCACATACCATGCACCGATGCACTAAGGAT-TTTATGAAAACATCGAATGCAT
1 TGATGCATCGATGCACAT-CCATGCACCGATGCACTAAGGATATTT-TG-AAACATCGAATGCAT
97423 T
63 T
* * * ** * *
97424 TGATGCATTGATGCACCAGCCATGCATCGATGCACTCTGGCTATTTTGAAACATCGAATGCACT
1 TGATGCATCGATGCA-CATCCATGCACCGATGCACTAAGGATATTTTGAAACATCGAATGCATT
*
97488 TGATGCATCGATGCAC-TCTTAGTGCACCGATGCACTAAGGAT
1 TGATGCATCGATGCACATC-CA-TGCACCGATGCACTAAGGAT
97530 CCAAAGATCA
Statistics
Matches: 140, Mismatches: 23, Indels: 17
0.78 0.13 0.09
Matches are distributed among these distances:
62 2 0.01
63 7 0.05
64 64 0.46
65 62 0.44
66 5 0.04
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (63 bp):
TGATGCATCGATGCACATCCATGCACCGATGCACTAAGGATATTTTGAAACATCGAATGCATT
Found at i:97501 original size:64 final size:64
Alignment explanation
Indices: 97294--97503 Score: 230
Period size: 65 Copynumber: 3.2 Consensus size: 64
97284 TTTTTCAGAG
* * **
97294 TGATGCACCGATGCACCAATCCATGCATCGATGCAC-CATGAATTAAATTG-AACATCGAATGCA
1 TGATGCATCGATGCACCAA-CCATGCATCGATGCACTC-TGGA-TATTTTGAAACATCGAATGCA
97357 TT
63 TT
* * **
97359 TCATGCATCGATGCA-CATACCATGCACCGATGCACTAAGGAT-TTTATGAAAACATCGAATGCA
1 TGATGCATCGATGCACCA-ACCATGCATCGATGCACTCTGGATATTT-TG-AAACATCGAATGCA
97422 TT
63 TT
* * * *
97424 TGATGCATTGATGCACCAGCCATGCATCGATGCACTCTGGCTATTTTGAAACATCGAATGCACT
1 TGATGCATCGATGCACCAACCATGCATCGATGCACTCTGGATATTTTGAAACATCGAATGCATT
97488 TGATGCATCGATGCAC
1 TGATGCATCGATGCAC
97504 TCTTAGTGCA
Statistics
Matches: 121, Mismatches: 17, Indels: 15
0.79 0.11 0.10
Matches are distributed among these distances:
62 1 0.01
63 3 0.02
64 49 0.40
65 63 0.52
66 5 0.04
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (64 bp):
TGATGCATCGATGCACCAACCATGCATCGATGCACTCTGGATATTTTGAAACATCGAATGCATT
Found at i:97503 original size:17 final size:19
Alignment explanation
Indices: 97475--97523 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
97465 TATTTTGAAA
97475 CATCGAATGCACT-TGA-TG
1 CATCG-ATGCACTCTGAGTG
*
97493 CATCGATGCACTCTTAGTG
1 CATCGATGCACTCTGAGTG
*
97512 CACCGATGCACT
1 CATCGATGCACT
97524 AAGGATCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 7 0.26
18 7 0.26
19 13 0.48
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (19 bp):
CATCGATGCACTCTGAGTG
Found at i:105467 original size:2 final size:2
Alignment explanation
Indices: 105460--105498 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
105450 CAGCTTAAGC
*
105460 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA GA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
105499 TTAATCATTG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
TA
Found at i:105911 original size:23 final size:22
Alignment explanation
Indices: 105883--105934 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 22
105873 CTTAATATAT
105883 TTTTGAAACAATTTCACAAAGTA
1 TTTTGAAACAATTTCA-AAAGTA
* * *
105906 TTTTGAACCATTTTCATAAGTA
1 TTTTGAAACAATTTCAAAAGTA
105928 TTTTGAA
1 TTTTGAA
105935 CCAAATCAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 12 0.46
23 14 0.54
ACGTcount: A:0.37, C:0.12, G:0.10, T:0.42
Consensus pattern (22 bp):
TTTTGAAACAATTTCAAAAGTA
Found at i:105926 original size:22 final size:23
Alignment explanation
Indices: 105883--105938 Score: 78
Period size: 22 Copynumber: 2.5 Consensus size: 23
105873 CTTAATATAT
*
105883 TTTTGAAACAATTTCACAAAGTA
1 TTTTGAACCAATTTCACAAAGTA
* *
105906 TTTTGAACCATTTTCA-TAAGTA
1 TTTTGAACCAATTTCACAAAGTA
105928 TTTTGAACCAA
1 TTTTGAACCAA
105939 ATCAAGCCTA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 15 0.52
23 14 0.48
ACGTcount: A:0.38, C:0.14, G:0.09, T:0.39
Consensus pattern (23 bp):
TTTTGAACCAATTTCACAAAGTA
Found at i:106061 original size:64 final size:65
Alignment explanation
Indices: 105965--106173 Score: 232
Period size: 64 Copynumber: 3.2 Consensus size: 65
105955 TTTTTCAGAG
* * *
105965 TGATGCACCGTTGCACCAATCCATGCATCGATGCAC-CATGATTTAAATTG-AACATCGAATGCA
1 TGATGCATCGATGCA-CAA-CCATGCATCGATGCACTCATGATTTATATTGAAACATCGAATGCA
106028 TT
64 TT
* * * *
106030 TCATGCATCGATGCACATACCATGCACCGATGCACTGAGGATTT-TA-TGAAACATCGAATGCAT
1 TGATGCATCGATGCACA-ACCATGCATCGATGCACTCATGATTTATATTGAAACATCGAATGCAT
106093 T
65 T
* ** * *
106094 TGATGCATCGATGCACCAGCCATGCATCGATGCACTC-TG-GCTATTTTGAAACATCGAATGCAC
1 TGATGCATCGATGCA-CAACCATGCATCGATGCACTCATGATTTATATTGAAACATCGAATGCAT
106157 T
65 T
106158 TGATGCATCGATGCAC
1 TGATGCATCGATGCAC
106174 TGATGCACTA
Statistics
Matches: 122, Mismatches: 16, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
62 1 0.01
63 5 0.04
64 95 0.78
65 21 0.17
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (65 bp):
TGATGCATCGATGCACAACCATGCATCGATGCACTCATGATTTATATTGAAACATCGAATGCATT
Found at i:106179 original size:16 final size:18
Alignment explanation
Indices: 106145--106180 Score: 58
Period size: 16 Copynumber: 2.1 Consensus size: 18
106135 TATTTTGAAA
106145 CATCGAATGCACTTGATG
1 CATCGAATGCACTTGATG
106163 CATCG-ATGCAC-TGATG
1 CATCGAATGCACTTGATG
106179 CA
1 CA
106181 CTAAGGGTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 7 0.39
17 6 0.33
18 5 0.28
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (18 bp):
CATCGAATGCACTTGATG
Found at i:106922 original size:5 final size:5
Alignment explanation
Indices: 106909--106941 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
106899 TAAAAATATT
*
106909 TATAT TATAG TATAG TATAG TATA- TATAG TATA
1 TATAG TATAG TATAG TATAG TATAG TATAG TATA
106942 TTATTTATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.45
Consensus pattern (5 bp):
TATAG
Found at i:106922 original size:10 final size:10
Alignment explanation
Indices: 106909--106945 Score: 58
Period size: 10 Copynumber: 3.8 Consensus size: 10
106899 TAAAAATATT
106909 TATATTATAG
1 TATATTATAG
*
106919 TATAGTATAG
1 TATATTATAG
106929 TATA-TATAG
1 TATATTATAG
106938 TATATTAT
1 TATATTAT
106946 TTATATATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
9 9 0.36
10 16 0.64
ACGTcount: A:0.41, C:0.00, G:0.11, T:0.49
Consensus pattern (10 bp):
TATATTATAG
Found at i:106950 original size:14 final size:14
Alignment explanation
Indices: 106909--106950 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
106899 TAAAAATATT
106909 TATATTATAGTATAG
1 TATATTATA-TATAG
*
106924 TATAGTATATATAG
1 TATATTATATATAG
*
106938 TATATTATTTATA
1 TATATTATATATA
106951 TATTACTGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
14 16 0.67
15 8 0.33
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.50
Consensus pattern (14 bp):
TATATTATATATAG
Found at i:108297 original size:16 final size:17
Alignment explanation
Indices: 108266--108297 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
108256 ATTGATCCTT
108266 TATTTAATTCATGTTTC
1 TATTTAATTCATGTTTC
108283 TATTTAATT-ATGTTT
1 TATTTAATTCATGTTT
108298 AAAGAGTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.25, C:0.06, G:0.06, T:0.62
Consensus pattern (17 bp):
TATTTAATTCATGTTTC
Found at i:115974 original size:47 final size:49
Alignment explanation
Indices: 115916--116025 Score: 138
Period size: 47 Copynumber: 2.3 Consensus size: 49
115906 AAATATTTCA
* * * *
115916 CTTAGGGTGAAAACCTGAATGGGCG-CTCTAAGTTGGAAAAAAAAT-CGT
1 CTTAGGATGAAAACCTGAAAGGGCGCCT-TAAATTGAAAAAAAAATGCGT
*
115964 -TTAGGATGAAAACCTGAAAGGGCGCCTTAAATTGAAAAAAAAATGGGT
1 CTTAGGATGAAAACCTGAAAGGGCGCCTTAAATTGAAAAAAAAATGCGT
116012 CTTA-GATGAAAACC
1 CTTAGGATGAAAACC
116026 CACAAAGGGT
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
47 37 0.69
48 14 0.26
49 3 0.06
ACGTcount: A:0.40, C:0.14, G:0.25, T:0.22
Consensus pattern (49 bp):
CTTAGGATGAAAACCTGAAAGGGCGCCTTAAATTGAAAAAAAAATGCGT
Found at i:116388 original size:49 final size:49
Alignment explanation
Indices: 116297--116440 Score: 180
Period size: 49 Copynumber: 2.9 Consensus size: 49
116287 TGTATTGAGT
* * * * * *
116297 TTCCAGAATGTTTTTCATATACTATGTTCCGTTCTCCTTATAAATTACC
1 TTCCAGAATGTTTGTCATATACTATGTTCCTTTTTTCTTATAAATGACA
* * * *
116346 TTCCAGAATGTTTGGCATATACTCTATTCCTTTTTTCATATAAATGACA
1 TTCCAGAATGTTTGTCATATACTATGTTCCTTTTTTCTTATAAATGACA
*
116395 TTCCAGAATGTTTGTCATATACTTTGTTCCTTTTTTCCTTATAAAT
1 TTCCAGAATGTTTGTCATATACTATGTTCCTTTTTT-CTTATAAAT
116441 AAATGTGGTC
Statistics
Matches: 80, Mismatches: 14, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
49 72 0.90
50 8 0.10
ACGTcount: A:0.25, C:0.19, G:0.09, T:0.47
Consensus pattern (49 bp):
TTCCAGAATGTTTGTCATATACTATGTTCCTTTTTTCTTATAAATGACA
Found at i:117539 original size:46 final size:46
Alignment explanation
Indices: 117483--117599 Score: 180
Period size: 46 Copynumber: 2.5 Consensus size: 46
117473 TTTTTGGTAT
*
117483 CCTTTTATGCCAATTATGCACTGTTATACATTTTAATTTATGGAAA
1 CCTTTCATGCCAATTATGCACTGTTATACATTTTAATTTATGGAAA
* * * *
117529 CCTTTCATGCCAATTATGCACTATTATACATTTTCATTTATGGCAT
1 CCTTTCATGCCAATTATGCACTGTTATACATTTTAATTTATGGAAA
*
117575 CCTTTCATGCCAATTATGCATTGTT
1 CCTTTCATGCCAATTATGCACTGTT
117600 TTTAATTTAA
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 64 1.00
ACGTcount: A:0.26, C:0.20, G:0.10, T:0.44
Consensus pattern (46 bp):
CCTTTCATGCCAATTATGCACTGTTATACATTTTAATTTATGGAAA
Found at i:117883 original size:54 final size:54
Alignment explanation
Indices: 117820--118186 Score: 477
Period size: 54 Copynumber: 6.8 Consensus size: 54
117810 GTAGTTCTTA
* *
117820 TACGATTGTTCATCAACACATGATGAATTCTGTGGGTTGCACACATAGTGCATG
1 TACGGTTGTTCATCAACTCATGATGAATTCTGTGGGTTGCACACATAGTGCATG
* * **
117874 TACGGTTGTTCATCATCTTATGATGAATTCCATGGGTTGCACACATAGTGCATG
1 TACGGTTGTTCATCAACTCATGATGAATTCTGTGGGTTGCACACATAGTGCATG
* * * * *
117928 TACGGTTGTTCATTAACTCATGATGAATT-TCATGGATTGCACACATAGTGCCTA
1 TACGGTTGTTCATCAACTCATGATGAATTCT-GTGGGTTGCACACATAGTGCATG
* * * * *
117982 TACGGTTGTTCATCATCTCATGATAAATTAC-ATGGGTTGCACACATAGTTCCTG
1 TACGGTTGTTCATCAACTCATGATGAATT-CTGTGGGTTGCACACATAGTGCATG
* * *
118036 TACGGTTGTTCATCAACTCATGATGAATTATGTGGGTTGCACACATAATGTATG
1 TACGGTTGTTCATCAACTCATGATGAATTCTGTGGGTTGCACACATAGTGCATG
* * *
118090 TACGGTTGTTCATCAACTTATGATGAATTCCGTGGATTGCACACATAGTGCATG
1 TACGGTTGTTCATCAACTCATGATGAATTCTGTGGGTTGCACACATAGTGCATG
* * *
118144 TACGGTTGTTTATCAACTCATAATGAATTATGTGGGTTGCACA
1 TACGGTTGTTCATCAACTCATGATGAATTCTGTGGGTTGCACA
118187 TATACTGCCT
Statistics
Matches: 270, Mismatches: 39, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
54 270 1.00
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.35
Consensus pattern (54 bp):
TACGGTTGTTCATCAACTCATGATGAATTCTGTGGGTTGCACACATAGTGCATG
Found at i:117950 original size:108 final size:108
Alignment explanation
Indices: 117820--118186 Score: 538
Period size: 108 Copynumber: 3.4 Consensus size: 108
117810 GTAGTTCTTA
* * *
117820 TACGATTGTTCATCAACACATGATGAATTCTGTGGGTTGCACACATAGTGCATGTACGGTTGTTC
1 TACGGTTGTTCATCAACTCATGATGAATTATGTGGGTTGCACACATAGTGCATGTACGGTTGTTC
117885 ATCATCTTATGATGAATTCCATGGGTTGCACACATAGTGCATG
66 ATCATCTTATGATGAATTCCATGGGTTGCACACATAGTGCATG
* * * * *
117928 TACGGTTGTTCATTAACTCATGATGAATT-TCATGGATTGCACACATAGTGCCTATACGGTTGTT
1 TACGGTTGTTCATCAACTCATGATGAATTAT-GTGGGTTGCACACATAGTGCATGTACGGTTGTT
* * * * *
117992 CATCATCTCATGATAAATTACATGGGTTGCACACATAGTTCCTG
65 CATCATCTTATGATGAATTCCATGGGTTGCACACATAGTGCATG
* *
118036 TACGGTTGTTCATCAACTCATGATGAATTATGTGGGTTGCACACATAATGTATGTACGGTTGTTC
1 TACGGTTGTTCATCAACTCATGATGAATTATGTGGGTTGCACACATAGTGCATGTACGGTTGTTC
* * *
118101 ATCAACTTATGATGAATTCCGTGGATTGCACACATAGTGCATG
66 ATCATCTTATGATGAATTCCATGGGTTGCACACATAGTGCATG
* *
118144 TACGGTTGTTTATCAACTCATAATGAATTATGTGGGTTGCACA
1 TACGGTTGTTCATCAACTCATGATGAATTATGTGGGTTGCACA
118187 TATACTGCCT
Statistics
Matches: 228, Mismatches: 29, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
107 1 0.00
108 226 0.99
109 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.35
Consensus pattern (108 bp):
TACGGTTGTTCATCAACTCATGATGAATTATGTGGGTTGCACACATAGTGCATGTACGGTTGTTC
ATCATCTTATGATGAATTCCATGGGTTGCACACATAGTGCATG
Found at i:122997 original size:46 final size:46
Alignment explanation
Indices: 122868--122998 Score: 217
Period size: 46 Copynumber: 2.8 Consensus size: 46
122858 ACCGCTATGT
* * *
122868 ATTTTCATTTGTGGCATCATTTTATGCCAATTATGCACTGTTATAC
1 ATTTTCATTTATGGCATCATTTCATGCCAATTATGCATTGTTATAC
* *
122914 ATTTTCATTTATGGCATCCTTTCATGCCAACTATGCATTGTTATAC
1 ATTTTCATTTATGGCATCATTTCATGCCAATTATGCATTGTTATAC
122960 ATTTTCATTTATGGCATCATTTCATGCCAATTATGCATT
1 ATTTTCATTTATGGCATCATTTCATGCCAATTATGCATT
122999 ATTTTGAATC
Statistics
Matches: 78, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.24, C:0.19, G:0.11, T:0.45
Consensus pattern (46 bp):
ATTTTCATTTATGGCATCATTTCATGCCAATTATGCATTGTTATAC
Found at i:123168 original size:54 final size:54
Alignment explanation
Indices: 123104--123335 Score: 286
Period size: 54 Copynumber: 4.3 Consensus size: 54
123094 TATTAAGATC
* * * *
123104 CACACGTAGTGCCTATACGGTCGTTCATCAACACATGATGAATTTTGTGGGTTG
1 CACACATAGTGCCTATACGGTTGTTCATCAACTCATGATGAATTTCGTGGGTTG
* * * *
123158 CACACTTAGTGCATGTACGGTTGTTCATCAACTTATGATGAATTTCGTGGGTTG
1 CACACATAGTGCCTATACGGTTGTTCATCAACTCATGATGAATTTCGTGGGTTG
* * * * * * *
123212 TACACATAGTGCATTTACGGTTGTTCATCAACTTATGATGGATTTCGTGGATTA
1 CACACATAGTGCCTATACGGTTGTTCATCAACTCATGATGAATTTCGTGGGTTG
* * *
123266 CACACATAGTGCCTGTACAGTTGTTCATCAACTCAAGATGAATTAT-GTGGGTTG
1 CACACATAGTGCCTATACGGTTGTTCATCAACTCATGATGAATT-TCGTGGGTTG
123320 CACACATAGTGCCTAT
1 CACACATAGTGCCTAT
123336 TTGGTAATCA
Statistics
Matches: 154, Mismatches: 23, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
54 153 0.99
55 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.34
Consensus pattern (54 bp):
CACACATAGTGCCTATACGGTTGTTCATCAACTCATGATGAATTTCGTGGGTTG
Found at i:123699 original size:22 final size:20
Alignment explanation
Indices: 123672--123727 Score: 69
Period size: 19 Copynumber: 2.8 Consensus size: 20
123662 TACCCCTACC
123672 ATGGTATCGATACTACTATACT
1 ATGGTATCGATACTACTAT--T
*
123694 ATGGTATTGATACT-CTATT
1 ATGGTATCGATACTACTATT
*
123713 ATAGTATCGATACTA
1 ATGGTATCGATACTA
123728 TTTCTCAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 13 0.43
21 4 0.13
22 13 0.43
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.39
Consensus pattern (20 bp):
ATGGTATCGATACTACTATT
Found at i:130153 original size:45 final size:46
Alignment explanation
Indices: 130076--130208 Score: 196
Period size: 45 Copynumber: 2.9 Consensus size: 46
130066 ACCGCTATGT
* * *
130076 ATTTTCATTTGTGACATCCTTTTATGCCAATTATGTACTGTTATAC
1 ATTTTCATTTATGACATCCTTTCATGCCAATTATGCACTGTTATAC
** *
130122 ATTTTCATTTATGGTAT-CTTTCATGCCAATTATGCATTGTTATAC
1 ATTTTCATTTATGACATCCTTTCATGCCAATTATGCACTGTTATAC
*
130167 ATTTTCATTTATGACATCCTTTCATGCCAATTATACACTGTT
1 ATTTTCATTTATGACATCCTTTCATGCCAATTATGCACTGTT
130209 CTTCATCTAA
Statistics
Matches: 76, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
45 40 0.53
46 36 0.47
ACGTcount: A:0.25, C:0.18, G:0.10, T:0.47
Consensus pattern (46 bp):
ATTTTCATTTATGACATCCTTTCATGCCAATTATGCACTGTTATAC
Found at i:130579 original size:54 final size:54
Alignment explanation
Indices: 130409--130913 Score: 557
Period size: 54 Copynumber: 9.3 Consensus size: 54
130399 TTTATTAAGA
* * * * * *
130409 TGCACACGTAGTTCCTATATGGTTGTTCGTCAACAT-ATGATGAATTTTGTGGGT
1 TGCACACATAGTGCCTGTACGGTTGTTCATCAAC-TCATGATGAATTTCGTGGGT
* * * *
130463 TGCACACATAGTGTCTGTACGGATGTTTAT-ATCTCATGATGAATTTCGTGGGT
1 TGCACACATAGTGCCTGTACGGTTGTTCATCAACTCATGATGAATTTCGTGGGT
* ** ** * *
130516 TGCACACATAGTGTCTGTACATTTGTTCATCATTTTATGATGAATTTTGTGGGT
1 TGCACACATAGTGCCTGTACGGTTGTTCATCAACTCATGATGAATTTCGTGGGT
* * * * *
130570 TGCTCACATAGTGCATGTATGGTTGTTCATCAACTCATGATGAA-TTCAGTAGAT
1 TGCACACATAGTGCCTGTACGGTTGTTCATCAACTCATGATGAATTTC-GTGGGT
** * * *
130624 TGCACACATAGTGCCTGTACGGTTAATCATCATCTCATTATGAATTCCGTGGGT
1 TGCACACATAGTGCCTGTACGGTTGTTCATCAACTCATGATGAATTTCGTGGGT
*
130678 TGCACACATAATGCATGCCTGTACGGTTGTTCATCAACTCATGATGAATTCCGTGGGT
1 TGCACACAT-A-G--TGCCTGTACGGTTGTTCATCAACTCATGATGAATTTCGTGGGT
* *
130736 TGCACACATAGTGCCTGTACGGTTGTTCATCAACTCAAGATGAATTTTGTGGGT
1 TGCACACATAGTGCCTGTACGGTTGTTCATCAACTCATGATGAATTTCGTGGGT
** * * * **
130790 TGCACACATAGTGTTTGTACGGTTTTTCATCAACTCATGAAGAATTTTGTGGAA
1 TGCACACATAGTGCCTGTACGGTTGTTCATCAACTCATGATGAATTTCGTGGGT
* * * * *
130844 TACACACATAGTGCATGTACGGTTATTCATCAATTTATGATGAATTTCGTGGGT
1 TGCACACATAGTGCCTGTACGGTTGTTCATCAACTCATGATGAATTTCGTGGGT
130898 TGCACACATAGTGCCT
1 TGCACACATAGTGCCT
130914 ATTTGGTAAT
Statistics
Matches: 378, Mismatches: 65, Indels: 16
0.82 0.14 0.03
Matches are distributed among these distances:
52 1 0.00
53 47 0.12
54 276 0.73
55 3 0.01
56 2 0.01
57 1 0.00
58 48 0.13
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.36
Consensus pattern (54 bp):
TGCACACATAGTGCCTGTACGGTTGTTCATCAACTCATGATGAATTTCGTGGGT
Found at i:130764 original size:220 final size:216
Alignment explanation
Indices: 130445--130913 Score: 611
Period size: 220 Copynumber: 2.2 Consensus size: 216
130435 TCGTCAACAT
* * * * *
130445 ATGATGAATTTTGTGGGTTGCACACAT-AGTGTCTGTACGGATGTTTATATCTCATGATGAATTT
1 ATGATGAATTTCGTGGGTTGCACACATAAGTGCCTGTACGGATGTTCATAACTCATGATGAATTC
* * ** * * *
130509 CGTGGGTTGCACACATAGTGTCTGTACATTTGTTCATCATTTTATGATGAATTTTGTGGGTTGCT
66 CGTGGGTTGCACACATAGTGCCTGTACAGTTGTTCATCAACTCAAGATGAATTTTGTGGGTTGCA
* * * * *
130574 CACATAGTGCATGTATGGTTGTTCATCAACTCATGATGAATTCAGTAGATTGCACACATAGTGCC
131 CACATAGTGCATGTACGGTTGTTCATCAACTCATGAAGAATTCAGTAGAATACACACATAGTGCA
130639 TGTACGGTTAATCATC-ATCTC
196 TGTACGGTTAATCATCAAT-TC
* * *
130660 ATTATGAATTCCGTGGGTTGCACACATAATGCATGCCTGTACGGTTGTTCATCAACTCATGATGA
1 ATGATGAATTTCGTGGGTTGCACACATAA-G--TGCCTGTACGGATGTTCAT-AACTCATGATGA
*
130725 ATTCCGTGGGTTGCACACATAGTGCCTGTACGGTTGTTCATCAACTCAAGATGAATTTTGTGGGT
62 ATTCCGTGGGTTGCACACATAGTGCCTGTACAGTTGTTCATCAACTCAAGATGAATTTTGTGGGT
** * ** *
130790 TGCACACATAGTGTTTGTACGGTTTTTCATCAACTCATGAAGAATTTTGTGGAATACACACATAG
127 TGCACACATAGTGCATGTACGGTTGTTCATCAACTCATGAAGAATTCAGTAGAATACACACATAG
* *
130855 TGCATGTACGGTTATTCATCAATTT
192 TGCATGTACGGTTAATCATCAATTC
130880 ATGATGAATTTCGTGGGTTGCACACAT-AGTGCCT
1 ATGATGAATTTCGTGGGTTGCACACATAAGTGCCT
130914 ATTTGGTAAT
Statistics
Matches: 217, Mismatches: 31, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
215 24 0.11
216 6 0.03
217 1 0.00
218 1 0.00
219 17 0.08
220 166 0.76
221 2 0.01
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.36
Consensus pattern (216 bp):
ATGATGAATTTCGTGGGTTGCACACATAAGTGCCTGTACGGATGTTCATAACTCATGATGAATTC
CGTGGGTTGCACACATAGTGCCTGTACAGTTGTTCATCAACTCAAGATGAATTTTGTGGGTTGCA
CACATAGTGCATGTACGGTTGTTCATCAACTCATGAAGAATTCAGTAGAATACACACATAGTGCA
TGTACGGTTAATCATCAATTC
Found at i:132862 original size:39 final size:37
Alignment explanation
Indices: 132788--133331 Score: 624
Period size: 39 Copynumber: 14.9 Consensus size: 37
132778 TATATATAAA
* * **
132788 ATTTTGAAAACATATACAATATATAGTTTTCAAAAAC
1 ATTTTGAAAATATATATAATATATAGTTTTTGAAAAC
* * * *
132825 ATCTTGAAAACATTTATATAATATATAGTTTTTAAAAAT
1 ATTTTG-AAA-ATATATATAATATATAGTTTTTGAAAAC
*
132864 ATTTTGAAAATATATATAATATATAATTTTTGAAAAC
1 ATTTTGAAAATATATATAATATATAGTTTTTGAAAAC
*
132901 ATCTTGAAAACATATATATAATATATAGTTTTT-AAAA-
1 ATTTTG-AAA-ATATATATAATATATAGTTTTTGAAAAC
* * *
132938 A---T-ATAATGTATATAATATATAGTTTTTGAAAAT
1 ATTTTGAAAATATATATAATATATAGTTTTTGAAAAC
132971 ATTTTG--AATATATAT-ATATATAGTTTTTGAAAAC
1 ATTTTGAAAATATATATAATATATAGTTTTTGAAAAC
* *
133005 ATTTTTAAAATATATATATAATATATAGTTTTTGAAAAT
1 A-TTTTGAAA-ATATATATAATATATAGTTTTTGAAAAC
*
133044 ATTTTGAAAATATATATAATATATATATTTTTGAAAAC
1 ATTTTGAAAATATATATAATATATA-GTTTTTGAAAAC
133082 ATTTTGAAAACATATATATAATATATAGTTTTT-AAAA-
1 ATTTTG-AAA-ATATATATAATATATAGTTTTTGAAAAC
* * *
133119 A---T-ATAATGTATATAATATATAGTTTTTGAAAAT
1 ATTTTGAAAATATATATAATATATAGTTTTTGAAAAC
133152 ATTTTG--AATATATAT-ATATATAGTTTTTGAAAAC
1 ATTTTGAAAATATATATAATATATAGTTTTTGAAAAC
* *
133186 ATTTTTAAAATATATATATAATATATAGTTTTTGAAAAT
1 A-TTTTGAAA-ATATATATAATATATAGTTTTTGAAAAC
*
133225 ATTTTGAAAATATATATAATATATATATTTTTGAAAAC
1 ATTTTGAAAATATATATAATATATA-GTTTTTGAAAAC
133263 ATTTTGAAAACATATATATAATATATAGTTTTTGAAAAC
1 ATTTTG-AAA-ATATATATAATATATAGTTTTTGAAAAC
133302 ATTTTGAAAATATATAT-AT-TATAGTTTTTG
1 ATTTTGAAAATATATATAATATATAGTTTTTG
133332 GCAGGCCTGA
Statistics
Matches: 442, Mismatches: 33, Indels: 66
0.82 0.06 0.12
Matches are distributed among these distances:
31 42 0.10
32 12 0.03
33 2 0.00
34 40 0.09
35 35 0.08
36 4 0.01
37 78 0.18
38 82 0.19
39 115 0.26
40 32 0.07
ACGTcount: A:0.46, C:0.03, G:0.07, T:0.45
Consensus pattern (37 bp):
ATTTTGAAAATATATATAATATATAGTTTTTGAAAAC
Found at i:132942 original size:17 final size:16
Alignment explanation
Indices: 132920--132972 Score: 54
Period size: 15 Copynumber: 3.3 Consensus size: 16
132910 ACATATATAT
132920 AATATATAGTTTTTAA
1 AATATATAGTTTTTAA
* * * *
132936 AA-ATATAATGTATAT
1 AATATATAGTTTTTAA
132951 AATATATAGTTTTTGAA
1 AATATATAGTTTTT-AA
132968 AATAT
1 AATAT
132973 TTTGAATATA
Statistics
Matches: 27, Mismatches: 8, Indels: 3
0.71 0.21 0.08
Matches are distributed among these distances:
15 11 0.41
16 10 0.37
17 6 0.22
ACGTcount: A:0.47, C:0.00, G:0.08, T:0.45
Consensus pattern (16 bp):
AATATATAGTTTTTAA
Found at i:132953 original size:31 final size:32
Alignment explanation
Indices: 132914--133226 Score: 193
Period size: 31 Copynumber: 8.9 Consensus size: 32
132904 TTGAAAACAT
*
132914 ATATATAATATATAGTTTTTAAAAATATAATG
1 ATATATAATATATAGTTTTTGAAAATATAATG
**
132946 -TATATAATATATAGTTTTTGAAAATATTTTG
1 ATATATAATATATAGTTTTTGAAAATATAATG
* *
132977 AATATATATATATATAGTTTTTGAAAACATTTTTAAAATAT
1 -ATATATA-ATATATAGTTTTTG-AAA-A----TATAAT-G
133018 ATATATAATATATAGTTTTTGAAAATATTTTGAAAAT-
1 ATATATAATATATAGTTTTTGAAAATA---T---AATG
* *
133055 ATATATAATATATATATTTTTGAAAACATTTTGAAAACAT-
1 ATATATAATATATA-GTTTTTG-AAA-A---T--ATA-ATG
*
133095 ATATATAATATATAGTTTTTAAAAATATAATG
1 ATATATAATATATAGTTTTTGAAAATATAATG
**
133127 -TATATAATATATAGTTTTTGAAAATATTTTG
1 ATATATAATATATAGTTTTTGAAAATATAATG
* *
133158 AATATATATATATATAGTTTTTGAAAACATTTTTAAAATAT
1 -ATATATA-ATATATAGTTTTTG-AAA-A----TATAAT-G
133199 ATATATAATATATAGTTTTTGAAAATAT
1 ATATATAATATATAGTTTTTGAAAATAT
133227 TTTGAAAATA
Statistics
Matches: 224, Mismatches: 21, Indels: 71
0.71 0.07 0.22
Matches are distributed among these distances:
31 58 0.26
32 2 0.01
33 16 0.07
34 29 0.13
35 6 0.03
36 2 0.01
37 17 0.08
38 15 0.07
39 40 0.18
40 37 0.17
43 1 0.00
45 1 0.00
ACGTcount: A:0.46, C:0.01, G:0.07, T:0.46
Consensus pattern (32 bp):
ATATATAATATATAGTTTTTGAAAATATAATG
Found at i:133081 original size:77 final size:76
Alignment explanation
Indices: 132946--133320 Score: 494
Period size: 77 Copynumber: 5.1 Consensus size: 76
132936 AAATATAATG
*
132946 TATATAATATATAGTTTTTGAAAATATTTTG--AATATATAT-ATATATAGTTTTTGAAAACATT
1 TATATAATATATAGTTTTTGAAAACATTTTGAAAATATATATAATATATAGTTTTTGAAAACATT
*
133008 TTTAAAATATA
66 TTGAAAATATA
* *
133019 TATATAATATATAGTTTTTGAAAATATTTTGAAAATATATATAATATATATATTTTTGAAAACAT
1 TATATAATATATAGTTTTTGAAAACATTTTGAAAATATATATAATATATA-GTTTTTGAAAACAT
*
133084 TTTGAAAACATA
65 TTTGAAAATATA
* * *
133096 TATATAATATATAGTTTTT-AAAA-A---T-ATAATGTATATAATATATAGTTTTTGAAAATATT
1 TATATAATATATAGTTTTTGAAAACATTTTGAAAATATATATAATATATAGTTTTTGAAAACATT
133155 TTG---A-ATA
66 TTGAAAATATA
* *
133162 TATAT-ATATATAGTTTTTGAAAACATTTTTAAAATATATATATAATATATAGTTTTTGAAAATA
1 TATATAATATATAGTTTTTGAAAACA-TTTTGAAA-ATATATATAATATATAGTTTTTGAAAACA
133226 TTTTGAAAATATA
64 TTTTGAAAATATA
133239 TATA-ATATATATA-TTTTTGAAAACATTTTGAAAACATATATATAATATATAGTTTTTGAAAAC
1 TATATA-ATATATAGTTTTTGAAAACATTTTG-AAA-ATATATATAATATATAGTTTTTGAAAAC
133302 ATTTTGAAAATATA
63 ATTTTGAAAATATA
133316 TATAT
1 TATAT
133321 TATAGTTTTT
Statistics
Matches: 270, Mismatches: 12, Indels: 35
0.85 0.04 0.11
Matches are distributed among these distances:
65 13 0.05
66 12 0.04
67 2 0.01
70 16 0.06
71 18 0.07
72 3 0.01
73 64 0.24
75 10 0.04
76 16 0.06
77 109 0.40
78 7 0.03
ACGTcount: A:0.46, C:0.02, G:0.07, T:0.46
Consensus pattern (76 bp):
TATATAATATATAGTTTTTGAAAACATTTTGAAAATATATATAATATATAGTTTTTGAAAACATT
TTGAAAATATA
Found at i:133123 original size:17 final size:16
Alignment explanation
Indices: 133101--133153 Score: 54
Period size: 15 Copynumber: 3.3 Consensus size: 16
133091 ACATATATAT
133101 AATATATAGTTTTTAA
1 AATATATAGTTTTTAA
* * * *
133117 AA-ATATAATGTATAT
1 AATATATAGTTTTTAA
133132 AATATATAGTTTTTGAA
1 AATATATAGTTTTT-AA
133149 AATAT
1 AATAT
133154 TTTGAATATA
Statistics
Matches: 27, Mismatches: 8, Indels: 3
0.71 0.21 0.08
Matches are distributed among these distances:
15 11 0.41
16 10 0.37
17 6 0.22
ACGTcount: A:0.47, C:0.00, G:0.08, T:0.45
Consensus pattern (16 bp):
AATATATAGTTTTTAA
Found at i:133138 original size:181 final size:181
Alignment explanation
Indices: 132806--133300 Score: 902
Period size: 181 Copynumber: 2.7 Consensus size: 181
132796 AACATATACA
** * * * * *
132806 ATATATAGTTTTCAAAAACATCTTGAAAACATTTATATAATATATAGTTTTTAAAAATATTTTGA
1 ATATATAGTTTTTGAAAACATTTTTAAAATATATATATAATATATAGTTTTTGAAAATATTTTGA
*
132871 AAATATATATAATATATA-ATTTTTGAAAACATCTTGAAAACATATATATAATATATAGTTTTTA
66 AAATATATATAATATATATATTTTTGAAAACATTTTGAAAACATATATATAATATATAGTTTTTA
132935 AAAATATAATGTATATAATATATAGTTTTTGAAAATATTTTGAATATATAT
131 AAAATATAATGTATATAATATATAGTTTTTGAAAATATTTTGAATATATAT
132986 ATATATAGTTTTTGAAAACATTTTTAAAATATATATATAATATATAGTTTTTGAAAATATTTTGA
1 ATATATAGTTTTTGAAAACATTTTTAAAATATATATATAATATATAGTTTTTGAAAATATTTTGA
133051 AAATATATATAATATATATATTTTTGAAAACATTTTGAAAACATATATATAATATATAGTTTTTA
66 AAATATATATAATATATATATTTTTGAAAACATTTTGAAAACATATATATAATATATAGTTTTTA
133116 AAAATATAATGTATATAATATATAGTTTTTGAAAATATTTTGAATATATAT
131 AAAATATAATGTATATAATATATAGTTTTTGAAAATATTTTGAATATATAT
133167 ATATATAGTTTTTGAAAACATTTTTAAAATATATATATAATATATAGTTTTTGAAAATATTTTGA
1 ATATATAGTTTTTGAAAACATTTTTAAAATATATATATAATATATAGTTTTTGAAAATATTTTGA
*
133232 AAATATATATAATATATATATTTTTGAAAACATTTTGAAAACATATATATAATATATAGTTTTTG
66 AAATATATATAATATATATATTTTTGAAAACATTTTGAAAACATATATATAATATATAGTTTTTA
133297 AAAA
131 AAAA
133301 CATTTTGAAA
Statistics
Matches: 305, Mismatches: 9, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
180 76 0.25
181 229 0.75
ACGTcount: A:0.46, C:0.03, G:0.06, T:0.45
Consensus pattern (181 bp):
ATATATAGTTTTTGAAAACATTTTTAAAATATATATATAATATATAGTTTTTGAAAATATTTTGA
AAATATATATAATATATATATTTTTGAAAACATTTTGAAAACATATATATAATATATAGTTTTTA
AAAATATAATGTATATAATATATAGTTTTTGAAAATATTTTGAATATATAT
Found at i:133313 original size:28 final size:28
Alignment explanation
Indices: 133264--133317 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
133254 TTTGAAAACA
*
133264 TTTTGAAAACATATATATAATATATAGT
1 TTTTGAAAACATATATAAAATATATAGT
*
133292 TTTTGAAAACAT-TTTGAAAATATATA
1 TTTTGAAAACATATAT-AAAATATATA
133318 TATTATAGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 2 0.09
28 21 0.91
ACGTcount: A:0.46, C:0.04, G:0.07, T:0.43
Consensus pattern (28 bp):
TTTTGAAAACATATATAAAATATATAGT
Found at i:134504 original size:16 final size:17
Alignment explanation
Indices: 134473--134504 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
134463 ATCCTTTCTT
134473 TATTTAATTCATGTTTC
1 TATTTAATTCATGTTTC
134490 TATTTAATT-ATGTTT
1 TATTTAATTCATGTTT
134505 AAGGAGTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.25, C:0.06, G:0.06, T:0.62
Consensus pattern (17 bp):
TATTTAATTCATGTTTC
Found at i:134566 original size:11 final size:11
Alignment explanation
Indices: 134542--134587 Score: 51
Period size: 11 Copynumber: 4.3 Consensus size: 11
134532 GATCCTACAT
134542 TTTTTATTT-A
1 TTTTTATTTAA
134552 -TTTTATTTAA
1 TTTTTATTTAA
* *
134562 TTTTTCTTTTA
1 TTTTTATTTAA
134573 TTTTTATTTTAA
1 TTTTTA-TTTAA
134585 TTT
1 TTT
134588 AACTGATTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
9 8 0.28
10 1 0.03
11 13 0.45
12 7 0.24
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (11 bp):
TTTTTATTTAA
Found at i:136280 original size:19 final size:19
Alignment explanation
Indices: 136212--136280 Score: 63
Period size: 19 Copynumber: 3.6 Consensus size: 19
136202 TTAATTATCT
136212 TTATTAA-AATATTATTAGA
1 TTATTAATAATATTATTA-A
136231 TTATTAGATTAATATTA--AA
1 TTATTA-A-TAATATTATTAA
* *
136250 TATATAAATAATATTATTCA
1 T-TATTAATAATATTATTAA
136270 TTATTAATAAT
1 TTATTAATAAT
136281 TTCATATTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 12
0.73 0.05 0.21
Matches are distributed among these distances:
18 8 0.20
19 18 0.44
20 8 0.20
22 7 0.17
ACGTcount: A:0.48, C:0.01, G:0.03, T:0.48
Consensus pattern (19 bp):
TTATTAATAATATTATTAA
Found at i:136390 original size:13 final size:13
Alignment explanation
Indices: 136357--136399 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
136347 TTACAATAAA
136357 AATATAATATCTTAT
1 AATATAATA--TTAT
*
136372 ATTATAATATTAT
1 AATATAATATTAT
*
136385 AATATATTATTAT
1 AATATAATATTAT
136398 AA
1 AA
136400 ATATTAATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 17 0.68
15 8 0.32
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (13 bp):
AATATAATATTAT
Found at i:136409 original size:23 final size:23
Alignment explanation
Indices: 136371--136433 Score: 78
Period size: 23 Copynumber: 2.8 Consensus size: 23
136361 TAATATCTTA
136371 TATTAT-AATATT-ATAATATAT
1 TATTATAAATATTAATAATATAT
136392 TATTATAAATATTAATAAATATAT
1 TATTATAAATATTAAT-AATATAT
* *
136416 T-TTATATATTTTAATAAT
1 TATTATAAATATTAATAAT
136434 TAATATTTTG
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
21 6 0.16
22 9 0.24
23 14 0.38
24 8 0.22
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (23 bp):
TATTATAAATATTAATAATATAT
Found at i:136413 original size:47 final size:47
Alignment explanation
Indices: 136306--136402 Score: 121
Period size: 47 Copynumber: 2.1 Consensus size: 47
136296 CAATGAAATT
* *
136306 AATAAATAATATAA-AT-TT-TATTAATAATTTATTATATATTATTAC
1 AATAAA-AATATAATATCTTATATTAATAATTTATAATATATTATTAA
136351 AATAAAAATATAATATCTTATATT-ATAATATTATAATATATTATTATA
1 AATAAAAATATAATATCTTATATTAATAAT-TTATAATATATTATTA-A
136399 AATA
1 AATA
136403 TTAATAAATA
Statistics
Matches: 45, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
44 7 0.16
45 8 0.18
46 7 0.16
47 19 0.42
48 4 0.09
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (47 bp):
AATAAAAATATAATATCTTATATTAATAATTTATAATATATTATTAA
Found at i:136416 original size:21 final size:21
Alignment explanation
Indices: 136369--136431 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 21
136359 TATAATATCT
136369 TATATTAT-AATATTATAATA
1 TATATTATAAATATTATAATA
136389 TATTATTATAAATATTAATAA-A
1 TA-TATTATAAATATT-ATAATA
* * *
136411 TATATTTTATATATTTTAATA
1 TATATTATAAATATTATAATA
136432 ATTAATATTT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
20 5 0.14
21 18 0.50
22 9 0.25
23 4 0.11
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (21 bp):
TATATTATAAATATTATAATA
Found at i:140366 original size:24 final size:23
Alignment explanation
Indices: 140339--140412 Score: 67
Period size: 24 Copynumber: 3.1 Consensus size: 23
140329 ATACGGAGAT
*
140339 ATCAGAAGTCAAAACAGAATTTAG
1 ATCAGAA-TCAAAACAGAATTCAG
* * *
140363 ATCATATATTAAAACAGAATTCAT
1 ATCAGA-ATCAAAACAGAATTCAG
* *
140387 ATCAGAAATCAGAATAGAATTCAG
1 ATCAG-AATCAAAACAGAATTCAG
140411 AT
1 AT
140413 AAATAATCAG
Statistics
Matches: 39, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
24 37 0.95
25 2 0.05
ACGTcount: A:0.50, C:0.12, G:0.12, T:0.26
Consensus pattern (23 bp):
ATCAGAATCAAAACAGAATTCAG
Found at i:140405 original size:12 final size:12
Alignment explanation
Indices: 140392--140443 Score: 54
Period size: 12 Copynumber: 4.4 Consensus size: 12
140382 TTCATATCAG
*
140392 AAATCAGAATAG
1 AAATCAGAATAA
*
140404 AATTCAG-ATAA
1 AAATCAGAATAA
*
140415 ATAATCAGAACAA
1 A-AATCAGAATAA
140428 AAATCAG-ATAA
1 AAATCAGAATAA
140439 AAATC
1 AAATC
140444 CTAATTAAGG
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
11 12 0.36
12 17 0.52
13 4 0.12
ACGTcount: A:0.60, C:0.12, G:0.10, T:0.19
Consensus pattern (12 bp):
AAATCAGAATAA
Found at i:140420 original size:24 final size:23
Alignment explanation
Indices: 140392--140443 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 23
140382 TTCATATCAG
* * *
140392 AAATCAGAATAGAATTCAGATAA
1 AAATCAGAACAAAAATCAGATAA
140415 ATAATCAGAACAAAAATCAGATAA
1 A-AATCAGAACAAAAATCAGATAA
140439 AAATC
1 AAATC
140444 CTAATTAAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 5 0.20
24 20 0.80
ACGTcount: A:0.60, C:0.12, G:0.10, T:0.19
Consensus pattern (23 bp):
AAATCAGAACAAAAATCAGATAA
Found at i:143367 original size:14 final size:14
Alignment explanation
Indices: 143348--143378 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
143338 GGAGTCAACT
143348 AACTCGTTCGAGTC
1 AACTCGTTCGAGTC
143362 AACTCGTTCGAGTC
1 AACTCGTTCGAGTC
143376 AAC
1 AAC
143379 CTATTGACTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (14 bp):
AACTCGTTCGAGTC
Found at i:147239 original size:16 final size:16
Alignment explanation
Indices: 147218--147248 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
147208 TAACTATTTA
147218 TTTATTCATTTGTTTT
1 TTTATTCATTTGTTTT
*
147234 TTTATTTATTTGTTT
1 TTTATTCATTTGTTT
147249 CATATTATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.13, C:0.03, G:0.06, T:0.77
Consensus pattern (16 bp):
TTTATTCATTTGTTTT
Found at i:148679 original size:27 final size:27
Alignment explanation
Indices: 148648--148703 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
148638 AAACAAATTA
* * **
148648 TTAATTATATTCATTAGATTAATAAAT
1 TTAATCATAATCATTAGAGAAATAAAT
*
148675 TTAATCATAATCATTTGAGAAATAAAT
1 TTAATCATAATCATTAGAGAAATAAAT
148702 TT
1 TT
148704 TATTTCTATA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.45
Consensus pattern (27 bp):
TTAATCATAATCATTAGAGAAATAAAT
Found at i:148914 original size:23 final size:25
Alignment explanation
Indices: 148866--148918 Score: 81
Period size: 24 Copynumber: 2.1 Consensus size: 25
148856 TTATTACGAC
*
148866 ATAATTATTAATTAAAATTTTAAAT
1 ATAATTATAAATTAAAATTTTAAAT
148891 ATAATT-TAAATTAAAATTTTAATAT
1 ATAATTATAAATTAAAATTTTAA-AT
148916 ATA
1 ATA
148919 TATATATATA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
24 15 0.58
25 11 0.42
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (25 bp):
ATAATTATAAATTAAAATTTTAAAT
Found at i:149272 original size:230 final size:225
Alignment explanation
Indices: 148917--149371 Score: 822
Period size: 230 Copynumber: 2.0 Consensus size: 225
148907 TTTTAATATA
148917 TATATATATATATATATATTTAAATATTATTTTATGTGATAATATTATAATATGAGATTAAAAAA
1 TATATATATATATATATATTTAAATATTATTTTATGTGATAATATTATAATATGAGATTAAAAAA
148982 ATAAGCTTTATAAATACTGAATTTAACAAGATTATAAATGTAGAAATTAAAATTATTACAACTTA
66 ATAAGCTTTATAAATACTGAATTTAACAAGATTATAAATGTAGAAATTAAAATTATTACAACTTA
*
149047 GTACACTAAAATTATAATAAAATCATCTAAAT-AATTTATGTTAAAATTTAAGTTCTCATATTTT
131 GTACACTAAAATTATAATAAAATCAACTAAATAAATTTATGTTAAAATTTAAGTTCTCATATTTT
*
149111 ATAGCACATATTTTATAAGGTTAAAAGCTC
196 ATAGCAAATATTTTATAAGGTTAAAAGCTC
149141 TATATATATATATATATATTTAAATATTATTTTATGTATGATAATATTATAATATGAGATTAAAA
1 TATATATATATATATATATTTAAATATTATTTTATG--TGATAATATTATAATATGAGATTAAAA
*
149206 AATTTAATAGCTTTATAAATACTGAATTTAACAAGATTTATAAATGTAGAAATTAAAATTATTAC
64 AA-AT-A-AGCTTTATAAATACTGAATTTAACAAGA-TTATAAATGTAGAAATTAAAATTATTAC
149271 AACTTAGTACACTAAAATTATAATAAAATCAACTAAATAAATTTATGTTAAAATTTAAGTTCTCA
125 AACTTAGTACACTAAAATTATAATAAAATCAACTAAATAAATTTATGTTAAAATTTAAGTTCTCA
149336 TATTTTATAGCAAATATTTTATAAGGTTAAAAGCTC
190 TATTTTATAGCAAATATTTTATAAGGTTAAAAGCTC
149372 AATTTTATTA
Statistics
Matches: 221, Mismatches: 3, Indels: 7
0.96 0.01 0.03
Matches are distributed among these distances:
224 36 0.16
226 29 0.13
227 1 0.00
228 1 0.00
229 28 0.13
230 65 0.29
231 61 0.28
ACGTcount: A:0.46, C:0.06, G:0.07, T:0.40
Consensus pattern (225 bp):
TATATATATATATATATATTTAAATATTATTTTATGTGATAATATTATAATATGAGATTAAAAAA
ATAAGCTTTATAAATACTGAATTTAACAAGATTATAAATGTAGAAATTAAAATTATTACAACTTA
GTACACTAAAATTATAATAAAATCAACTAAATAAATTTATGTTAAAATTTAAGTTCTCATATTTT
ATAGCAAATATTTTATAAGGTTAAAAGCTC
Found at i:149930 original size:62 final size:62
Alignment explanation
Indices: 149847--149977 Score: 253
Period size: 62 Copynumber: 2.1 Consensus size: 62
149837 TTTTCTGTAC
*
149847 TTAAGTTGTATAAAACTAGTTTTCTATGTACTATCATATTCTATTTCCATTTTAAACCATGG
1 TTAATTTGTATAAAACTAGTTTTCTATGTACTATCATATTCTATTTCCATTTTAAACCATGG
149909 TTAATTTGTATAAAACTAGTTTTCTATGTACTATCATATTCTATTTCCATTTTAAACCATGG
1 TTAATTTGTATAAAACTAGTTTTCTATGTACTATCATATTCTATTTCCATTTTAAACCATGG
149971 TTAATTT
1 TTAATTT
149978 CCAACAGTTG
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
62 68 1.00
ACGTcount: A:0.31, C:0.14, G:0.08, T:0.47
Consensus pattern (62 bp):
TTAATTTGTATAAAACTAGTTTTCTATGTACTATCATATTCTATTTCCATTTTAAACCATGG
Found at i:154038 original size:21 final size:21
Alignment explanation
Indices: 154001--154086 Score: 65
Period size: 21 Copynumber: 4.1 Consensus size: 21
153991 TAGGGATTTT
*
154001 TATTTTGAT-ATTGTTAAAATA
1 TATTTT-ATAATTATTAAAATA
*
154022 TATTTTTTAATTATTAAAA-A
1 TATTTTATAATTATTAAAATA
154042 -A--TTATAATTATCATAAAATA
1 TATTTTATAATTAT--TAAAATA
*
154062 TATTATTATAATCATTTAAAATA
1 TATT-TTATAATTA-TTAAAATA
154085 TA
1 TA
154087 ATAAATAATT
Statistics
Matches: 52, Mismatches: 4, Indels: 16
0.72 0.06 0.22
Matches are distributed among these distances:
17 9 0.17
19 6 0.12
20 3 0.06
21 16 0.31
23 9 0.17
24 8 0.15
25 1 0.02
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (21 bp):
TATTTTATAATTATTAAAATA
Found at i:154069 original size:24 final size:23
Alignment explanation
Indices: 154042--154114 Score: 64
Period size: 23 Copynumber: 3.3 Consensus size: 23
154032 TTATTAAAAA
*
154042 ATTATAATTATCATAAAATATATT
1 ATTATAATCAT-ATAAAATATATT
* *
154066 ATTATAATCATTTAAAATATAAT
1 ATTATAATCATATAAAATATATT
* *
154089 A-AATAAT--TAT-AATTATATT
1 ATTATAATCATATAAAATATATT
154108 ATTATAA
1 ATTATAA
154115 AATATATTAT
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
19 8 0.20
20 6 0.15
22 5 0.12
23 11 0.28
24 10 0.25
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (23 bp):
ATTATAATCATATAAAATATATT
Found at i:154123 original size:20 final size:20
Alignment explanation
Indices: 154100--154142 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
154090 AATAATTATA
154100 ATTATATT-ATTATAAAATAT
1 ATTATATTAATTAT-AAATAT
* *
154120 ATTATTTTAATTATTAATAT
1 ATTATATTAATTATAAATAT
154140 ATT
1 ATT
154143 CGGATCGAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 15 0.75
21 5 0.25
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
ATTATATTAATTATAAATAT
Found at i:155598 original size:8 final size:9
Alignment explanation
Indices: 155583--155614 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
155573 GGGAAGATAA
155583 TTTAAAAAT
1 TTTAAAAAT
155592 TTTAAAAAT
1 TTTAAAAAT
155601 TTTAAAAAT
1 TTTAAAAAT
155610 TTTAA
1 TTTAA
155615 TTTTTTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (9 bp):
TTTAAAAAT
Found at i:156475 original size:72 final size:66
Alignment explanation
Indices: 156378--156522 Score: 159
Period size: 66 Copynumber: 2.1 Consensus size: 66
156368 AATTAAATTT
* * *
156378 GACTCAATTTGAAAACTCGCAAGC-TTAAAGTTTTTAAGCTCGACTCAAATTTGAAATAAAGAAT
1 GACTCAATTCGAAAACTCGCAAGCTTTAAA-TTTTCAAG-T---CTC--ATTTGAAATAAAAAAT
156442 TGAAGCTC
59 TGAAGCTC
* *
156450 GACTCAATTCGAAAGA-TCGCGAGCTTTAAATTTTCAAGTTTCATTTGAAATAAAAAATTGAAGC
1 GACTCAATTCGAAA-ACTCGCAAGCTTTAAATTTTCAAGTCTCATTTGAAATAAAAAATTGAAGC
156514 TC
65 TC
156516 GACTCAA
1 GACTCAA
156523 ATTTGAACCC
Statistics
Matches: 66, Mismatches: 5, Indels: 10
0.81 0.06 0.12
Matches are distributed among these distances:
66 30 0.45
68 2 0.03
71 1 0.02
72 27 0.41
73 6 0.09
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.30
Consensus pattern (66 bp):
GACTCAATTCGAAAACTCGCAAGCTTTAAATTTTCAAGTCTCATTTGAAATAAAAAATTGAAGCT
C
Done.