genome.fa.s3262.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003262.1 Hibiscus syriacus cultivar Beakdansim tig00006858_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94263

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6585--6618	12	2.8	12	90	0	50	44	2	0	52	1.16
6599--6940	22	15.6	22	87	2	474	42	0	9	48	1.35
6964--7022	31	1.9	31	89	0	91	45	6	5	42	1.52
12128--12301	44	4.0	44	77	10	169	58	6	13	22	1.58
12112--12293	88	2.1	88	83	8	228	57	5	13	23	1.58
21549--21710	83	1.9	85	89	5	256	32	12	12	41	1.82
23645--23681	19	1.9	19	88	0	56	29	10	10	48	1.72
24551--24598	23	2.1	24	84	7	64	68	12	2	16	1.29
26816--26934	60	2.0	60	96	0	220	27	36	17	17	1.93
28125--28179	26	2.0	28	82	6	69	50	3	1	43	1.30
29861--30028	72	2.3	72	84	6	216	38	1	5	54	1.31
29861--30021	74	2.2	72	82	10	202	37	1	5	55	1.31
30031--30295	73	3.6	73	80	8	272	52	6	3	37	1.43
33795--33842	20	2.4	20	75	0	60	35	8	8	47	1.64
40181--40262	32	2.5	32	82	9	85	58	6	2	32	1.36
42337--42371	18	1.9	18	88	0	52	45	2	0	51	1.16
44705--44792	35	2.5	34	81	7	88	62	5	1	30	1.26
46617--46690	35	2.1	36	89	5	114	33	5	13	47	1.66
48556--48614	31	1.9	31	92	0	100	40	6	10	42	1.65
48639--48681	22	2.0	22	95	0	77	51	11	0	37	1.39
48641--48689	22	2.2	22	85	3	62	55	12	0	32	1.37
48763--48816	14	3.6	14	72	18	54	59	3	0	37	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48741--49251	32	18.4	31	70	26	293	53	11	0	34	1.40
48629--49205	166	3.5	166	83	11	735	52	12	0	34	1.41
48805--48847	22	2.0	22	95	0	77	51	11	0	37	1.39
48629--49251	54	11.4	54	75	15	480	52	12	0	34	1.40
48809--48931	26	4.7	26	65	18	83	53	13	0	32	1.40
48807--48855	22	2.2	22	85	3	62	55	12	0	32	1.37
48863--48940	26	3.0	26	72	12	79	56	15	0	28	1.40
48933--48986	14	3.6	14	72	18	54	57	3	1	37	1.27
48975--49039	22	3.0	22	97	0	121	50	12	0	36	1.40
48943--49173	80	3.0	78	89	5	335	51	12	0	34	1.44
49053--49127	22	3.2	23	75	17	82	54	17	0	28	1.43
49131--49173	22	2.0	22	100	0	86	51	13	0	34	1.42
49133--49181	22	2.2	22	88	3	71	55	14	0	30	1.40
49187--49235	22	2.2	22	85	3	62	55	12	0	32	1.37
49230--49266	15	2.5	15	95	0	65	59	0	0	40	0.97
49230--49289	15	4.2	15	75	14	56	55	1	0	43	1.10
48943--49266	102	3.1	104	80	14	348	52	11	0	35	1.40
50929--51130	113	1.8	109	86	4	287	40	18	11	29	1.86
54410--54438	7	4.1	7	100	0	58	27	13	0	58	1.36
60732--60875	75	1.9	79	87	8	217	48	3	11	36	1.57
60732--60875	76	1.9	78	88	5	222	48	3	11	36	1.57
62200--62246	16	2.9	16	90	0	67	23	0	2	74	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62513--62549	8	4.5	8	90	6	56	75	0	0	24	0.80
62494--62538	21	2.1	21	91	0	72	75	0	0	24	0.80
62494--62549	13	3.6	17	72	22	68	75	0	0	25	0.81
62494--62560	29	2.4	28	87	2	98	73	2	0	23	0.97
65910--65982	37	2.0	37	81	10	87	47	5	2	43	1.40
66410--66503	47	2.0	47	91	0	152	35	7	7	50	1.59
67304--67349	17	2.7	17	96	0	83	39	23	0	36	1.55
69487--69528	2	21.0	2	100	0	84	50	0	0	50	1.00
73426--73500	24	3.1	24	90	0	114	25	32	12	30	1.92
81925--82023	30	3.3	30	98	0	189	22	17	25	35	1.95
82091--82146	18	3.1	18	78	0	58	23	37	12	26	1.90
90490--90526	18	2.1	18	89	0	56	40	8	8	43	1.64
90488--90528	8	4.7	9	80	17	50	36	7	7	48	1.59
94056--94130	30	2.4	31	80	6	89	28	32	25	14	1.95
94009--94130	62	2.0	62	81	15	146	26	29	27	16	1.97

Tables:   1

The End!