genome.fa.s3263.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003263.1 Hibiscus syriacus cultivar Beakdansim tig00006859_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89839

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84--208	33	3.8	33	91	0	178	31	24	15	28	1.95
67--208	66	2.2	66	83	1	178	30	25	14	29	1.95
8118--8149	3	10.7	3	93	0	55	62	0	3	34	1.11
8299--8983	134	5.1	133	82	3	770	29	18	23	28	1.98
17953--18738	134	5.9	133	83	4	879	28	16	24	30	1.96
17994--18748	402	1.9	400	83	4	1002	28	16	25	29	1.97
26120--26148	3	9.7	3	100	0	58	65	0	0	34	0.93
28739--28787	20	2.5	20	93	0	89	44	34	0	20	1.52
35399--35447	19	2.6	18	84	9	62	32	2	4	61	1.26
35451--35475	2	12.5	2	100	0	50	48	0	0	52	1.00
38958--39015	19	3.3	18	79	9	66	37	0	0	62	0.96
45727--45788	21	3.2	19	79	11	63	33	0	3	62	1.11
45727--45768	19	2.2	19	86	4	57	30	0	4	64	1.14
45754--45852	9	10.7	9	68	25	55	35	1	3	60	1.19
45737--45807	29	2.4	29	75	13	74	32	1	2	63	1.18
45759--45784	12	2.2	12	100	0	52	42	0	0	57	0.98
45733--45792	19	3.0	20	81	13	63	38	0	1	60	1.07
45754--45810	19	2.8	20	86	5	71	35	1	1	61	1.17
45733--45834	48	2.2	46	81	11	111	35	0	2	60	1.18
45847--45886	17	2.3	17	86	4	53	15	0	5	80	0.88
49427--49584	21	7.8	20	72	7	86	38	25	17	18	1.92
49551--49724	20	8.6	20	77	6	172	36	25	18	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50107--50174	33	2.1	33	91	0	109	10	22	19	48	1.78
50256--50361	21	5.6	20	72	16	91	45	17	24	12	1.83
50269--50365	20	5.2	20	72	18	100	46	17	24	11	1.81
50249--50365	41	3.1	38	80	14	136	46	16	25	11	1.81
50316--50372	14	3.7	14	75	20	60	43	22	24	8	1.81
50308--50388	33	2.5	33	95	0	144	46	22	22	8	1.78
50384--50477	19	5.5	19	69	23	82	9	24	22	43	1.83
50406--50495	14	5.7	14	69	23	63	10	24	22	43	1.83
50389--50503	33	3.5	33	96	0	212	10	23	20	46	1.81
52195--52568	93	4.1	93	97	1	718	22	12	19	45	1.84
52195--52568	184	2.0	185	97	1	716	22	12	19	45	1.84
52616--52730	19	6.3	19	81	10	141	46	28	16	8	1.77
52726--52846	19	6.8	18	71	22	87	9	18	23	47	1.78
52731--52825	35	2.8	33	81	6	127	10	17	23	48	1.78
52726--52862	19	7.6	19	70	23	82	10	17	24	46	1.80
54784--54819	14	2.6	14	95	0	63	33	0	22	44	1.53
54926--55025	19	5.5	19	84	12	147	45	17	23	15	1.85
54926--55041	53	2.2	53	95	1	207	43	17	23	15	1.87
55048--55200	33	4.5	33	74	16	159	13	22	17	45	1.84
55070--55286	19	12.4	19	75	19	231	13	21	17	46	1.83
55048--55258	52	4.0	52	98	0	395	13	23	17	45	1.83
55089--55300	33	6.2	33	75	14	216	13	22	18	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57579--57603	12	2.1	12	100	0	50	0	28	0	72	0.86
57778--57824	24	2.0	24	87	8	69	38	21	14	25	1.92
58507--58736	20	11.5	20	83	1	219	20	18	24	37	1.94
58723--58805	21	4.0	21	73	6	78	25	16	24	33	1.96
58703--58801	42	2.4	43	77	11	100	21	18	23	37	1.94
58979--59018	19	2.2	18	95	4	71	32	0	0	67	0.91
58984--59034	19	2.7	19	87	3	68	39	0	0	60	0.97
59106--59189	9	9.1	9	70	17	57	33	1	2	63	1.15
62638--62690	9	5.9	9	75	16	56	41	0	0	58	0.98
62640--62694	18	3.0	19	89	10	80	41	0	0	58	0.98
62815--62876	28	2.2	29	82	8	83	35	0	1	62	1.05
62823--62862	20	2.1	19	85	4	53	32	0	2	65	1.06
62823--62862	19	2.0	20	85	4	55	32	0	2	65	1.06
65586--65623	18	2.1	18	95	0	67	65	2	0	31	1.06
67035--67092	23	2.5	23	97	0	107	13	0	24	62	1.32
69320--69426	31	3.3	31	68	14	90	20	20	19	39	1.93
69296--69422	66	1.9	66	87	3	184	20	22	22	35	1.96
71499--71571	30	2.4	30	83	0	92	20	23	20	35	1.96
77262--77343	22	3.7	22	93	0	128	17	37	19	25	1.93
77680--77746	29	2.3	29	87	5	91	43	8	2	44	1.50
82871--82896	2	13.0	2	100	0	52	50	0	0	50	1.00
83675--83704	15	2.0	15	100	0	60	46	13	13	26	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85987--86070	25	3.4	25	96	0	150	39	10	3	46	1.56
88084--89265	81	14.9	81	83	4	1352	28	24	11	35	1.90
88084--89265	239	5.0	241	83	4	1369	28	24	11	35	1.90
88084--89265	320	3.7	320	81	6	1400	28	24	11	35	1.90
89460--89604	52	2.7	54	78	7	163	35	18	12	33	1.88

Tables:   1

The End!