genome.fa.s3266.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003266.1 Hibiscus syriacus cultivar Beakdansim tig00006863_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94277

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2072--2281	20	10.4	20	73	9	122	39	24	17	18	1.92
2133--2303	20	8.4	20	79	7	184	38	24	18	19	1.93
2072--2313	40	6.0	40	83	4	263	38	24	17	19	1.92
2545--2601	27	2.2	28	78	15	68	31	35	8	24	1.86
2899--2971	21	3.5	20	81	5	76	52	17	16	13	1.75
2914--2978	21	3.1	21	84	4	87	52	16	20	10	1.73
2960--3024	14	4.3	14	73	17	58	46	21	23	9	1.80
2955--3035	33	2.5	33	93	0	135	46	22	20	9	1.80
3031--3110	20	4.1	19	84	6	106	12	23	18	45	1.84
5136--5202	21	3.2	21	66	6	55	23	35	20	19	1.95
5084--5202	42	2.8	42	81	5	107	22	36	18	22	1.95
6552--6587	14	2.6	14	90	0	54	30	0	22	47	1.52
6729--6774	19	2.4	19	96	0	83	15	17	17	50	1.79
6781--6833	20	2.7	20	96	0	97	24	22	20	32	1.98
8311--8364	24	2.2	24	93	0	90	40	20	18	20	1.91
8311--8378	24	2.8	24	84	0	64	38	20	17	23	1.93
9227--9380	20	7.6	20	78	5	157	18	18	23	38	1.93
9230--9380	41	3.7	40	91	0	221	19	18	23	38	1.93
9212--9402	41	4.7	39	81	10	172	20	18	24	37	1.94
9269--9403	61	2.2	60	81	6	155	19	18	25	36	1.94
9389--9441	20	2.7	20	88	5	72	13	16	24	45	1.83
9494--9544	20	2.5	20	78	6	59	15	15	33	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25199--25237	16	2.5	15	84	12	51	53	2	0	43	1.14
34081--34150	12	5.8	12	80	6	79	51	18	15	14	1.77
34079--34187	48	2.3	47	85	3	137	47	17	16	18	1.83
34079--34187	24	4.5	25	78	6	109	47	17	16	18	1.83
35782--35818	17	2.1	18	90	5	58	35	13	5	45	1.66
36657--36704	7	6.9	7	77	17	55	27	25	33	14	1.94
36656--36688	15	2.2	15	100	0	66	24	24	39	12	1.89
36699--36768	18	4.2	18	73	17	78	14	17	48	20	1.81
38269--38317	2	24.5	2	100	0	98	48	0	0	51	1.00
40217--40262	18	2.5	19	86	10	60	54	8	0	36	1.32
40645--40699	23	2.4	23	84	0	65	21	1	5	70	1.16
41329--41353	10	2.5	10	100	0	50	32	12	12	44	1.78
52299--52338	17	2.3	18	86	4	55	60	2	0	37	1.11
52687--52757	2	35.5	2	100	0	142	50	0	0	49	1.00
60312--60356	23	2.0	23	86	0	63	26	28	24	20	1.99
60335--60638	149	2.0	149	98	0	581	36	20	15	27	1.93
61184--61221	20	2.0	20	85	10	53	7	28	34	28	1.85
61116--61267	67	2.3	67	95	1	277	15	25	28	30	1.96
65985--66040	17	3.5	16	75	7	51	41	7	3	48	1.48
70454--70512	31	1.9	31	89	0	91	40	10	8	40	1.69
70453--70521	31	2.2	30	82	10	84	39	11	10	39	1.75
71112--71170	31	2.0	29	93	6	100	32	13	16	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71101--71187	29	2.8	31	82	6	106	31	11	21	35	1.89
71903--71998	35	2.7	35	88	0	138	40	30	1	28	1.63
72480--72770	143	2.0	140	88	7	426	46	8	7	36	1.64
72941--73017	35	2.2	35	86	4	111	35	0	19	45	1.51
79368--79393	2	13.0	2	100	0	52	50	0	0	50	1.00
79488--79554	30	2.2	31	89	7	102	44	2	5	46	1.43
79501--79565	30	2.2	30	80	2	78	46	4	9	40	1.57
90735--90776	20	2.1	20	100	0	84	21	35	9	33	1.86
92653--92704	21	2.4	21	81	9	61	36	23	15	25	1.93

Tables:   1

The End!