genome.fa.s3268.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003268.1 Hibiscus syriacus cultivar Beakdansim tig00006868_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  150736

Tables:   1   2   

This is table  1  of  2  ( 130 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9398--9462	25	2.6	25	80	0	85	35	9	13	41	1.77
9809--9881	23	3.2	23	88	0	101	34	4	21	39	1.73
10224--10260	18	2.1	18	89	0	56	32	5	10	51	1.60
10216--10262	24	2.0	24	86	0	67	34	4	14	46	1.64
10519--10605	39	2.2	39	91	0	147	48	19	13	18	1.81
11027--11099	23	3.2	23	88	0	101	34	4	21	39	1.73
11455--11527	23	3.2	23	88	0	101	34	4	21	39	1.73
10824--13162	428	5.5	430	97	0	4460	41	7	12	39	1.71
11883--11955	23	3.2	23	80	0	83	35	4	19	41	1.70
12312--12384	23	3.2	23	84	0	92	34	4	20	41	1.72
10824--13162	857	2.7	859	97	0	4465	41	7	12	39	1.71
12740--12812	23	3.2	23	88	0	101	34	4	21	39	1.73
12958--13024	30	2.2	29	82	10	73	52	4	0	43	1.21
13576--13659	37	2.3	37	100	0	168	51	22	11	14	1.75
14204--14234	2	15.5	2	100	0	62	48	0	0	51	1.00
15932--15971	20	2.0	20	85	0	53	25	20	17	37	1.94
17217--17241	2	12.5	2	100	0	50	52	0	0	48	1.00
17413--17475	21	2.9	21	74	21	58	25	6	11	57	1.57
22577--22623	24	2.0	24	86	0	67	21	12	14	51	1.76
32325--32464	66	2.1	66	90	0	217	39	19	12	29	1.88
32781--32919	21	6.6	21	78	12	151	19	20	25	34	1.96
32787--32898	42	2.7	42	94	0	197	19	19	25	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32781--32936	63	2.5	60	86	8	170	19	19	24	35	1.95
32830--32960	63	2.1	63	88	2	192	22	19	24	32	1.97
32943--33077	62	2.2	63	88	6	204	30	24	21	23	1.99
32945--33077	21	6.4	21	88	5	198	30	24	21	23	1.99
33094--33147	21	2.6	21	87	0	81	22	22	25	29	1.99
33459--33759	20	14.9	20	77	14	230	39	22	20	16	1.92
33459--33758	60	4.9	60	78	12	283	39	22	21	16	1.92
33883--33927	6	7.5	6	100	0	90	33	51	15	0	1.44
34671--34708	6	6.3	6	100	0	76	0	15	50	34	1.45
34819--34968	20	7.4	20	79	7	151	16	21	23	38	1.93
34819--34972	40	3.8	40	82	8	195	16	21	22	39	1.92
34819--34972	60	2.5	61	85	4	213	16	21	22	39	1.92
34959--35012	20	2.7	20	91	0	81	12	20	16	50	1.78
41980--42301	112	2.9	112	91	0	536	48	13	12	25	1.78
42556--42593	20	1.9	20	94	0	67	34	31	15	18	1.92
42615--42703	46	2.0	46	93	2	153	29	25	16	28	1.97
50144--50188	21	2.1	21	83	0	54	11	37	15	35	1.83
51141--51178	20	1.9	20	94	0	67	31	34	15	18	1.92
51200--51288	46	2.0	46	93	2	153	29	25	16	28	1.97
52044--52294	112	2.2	112	96	0	457	44	13	16	25	1.85
52165--52620	182	2.5	182	92	0	752	44	13	15	26	1.84
53046--53093	23	2.1	23	88	0	69	39	18	6	35	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56167--56261	50	1.9	50	84	0	127	17	33	28	20	1.95
60161--60199	18	2.2	18	90	0	60	12	35	20	30	1.90
61168--61212	21	2.1	21	87	0	63	31	28	24	15	1.96
61790--61824	18	1.9	18	88	11	54	54	5	17	22	1.64
61881--61924	22	2.0	22	86	4	63	45	0	22	31	1.53
62642--62945	149	2.0	149	97	0	572	27	17	20	34	1.95
62924--62968	23	2.0	23	86	0	63	20	24	28	26	1.99
66102--66146	21	2.1	21	87	0	63	31	28	24	15	1.96
66727--66761	18	1.9	18	88	11	54	54	5	17	22	1.64
66818--66861	22	2.0	22	86	4	63	45	0	22	31	1.53
67576--67879	149	2.0	149	96	0	563	27	17	20	34	1.95
67858--67902	23	2.0	23	86	0	63	20	24	28	26	1.99
68607--68664	18	3.2	18	85	0	80	24	13	29	32	1.94
70159--70378	111	2.0	111	96	0	404	45	10	8	35	1.69
70665--70761	49	2.0	49	85	2	131	27	27	24	19	1.99
75762--75834	22	3.2	22	66	17	58	45	8	13	32	1.73
75777--75935	80	2.0	80	88	4	241	39	10	15	35	1.80
81043--81122	42	1.9	42	94	5	144	38	22	12	26	1.90
88311--88341	16	1.9	16	93	0	53	29	29	3	38	1.73
89999--90068	31	2.2	33	84	7	90	31	22	5	40	1.78
91077--91107	15	2.1	15	93	0	53	45	0	0	54	0.99
91256--91292	2	19.0	2	88	5	58	48	2	0	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95716--95747	14	2.3	14	100	0	64	40	28	0	31	1.57
97508--97554	23	2.0	23	100	0	94	23	25	25	25	2.00
102846--102884	2	19.5	2	100	0	78	48	0	0	51	1.00
107749--107811	30	2.1	30	87	0	90	42	15	1	39	1.57
109414--109570	20	7.8	20	73	6	93	38	25	17	19	1.93
109414--109570	41	3.9	41	70	11	126	38	25	17	19	1.93
109557--109730	20	8.6	20	79	5	118	34	25	20	20	1.96
109537--109731	40	4.9	39	80	3	183	35	24	20	19	1.95
109537--109730	60	3.2	60	83	0	244	35	24	20	19	1.95
110114--110184	33	2.2	33	94	0	124	11	23	16	47	1.79
110263--110337	20	3.8	20	80	5	89	42	20	24	13	1.87
110321--110377	14	3.7	14	75	20	60	43	22	24	8	1.81
110275--110393	33	3.4	33	88	6	157	44	22	22	10	1.82
110275--110363	19	4.9	19	73	15	80	43	21	23	11	1.84
110411--110500	14	5.7	14	72	23	72	8	24	23	43	1.82
110394--110507	33	3.5	33	95	1	203	9	22	21	46	1.80
110389--110486	19	5.7	19	69	22	81	10	22	22	44	1.82
112200--112662	93	5.1	93	95	2	841	22	12	19	46	1.83
112200--112662	183	2.5	183	95	2	835	22	12	19	46	1.83
112710--112838	19	7.3	19	75	17	125	45	28	17	8	1.77
112746--112838	33	2.8	32	91	4	150	46	27	18	7	1.76
112710--112838	52	2.5	52	74	14	140	45	28	17	8	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112834--112952	19	6.8	18	73	19	101	9	19	24	47	1.78
112856--112912	14	3.7	14	72	20	51	7	19	28	45	1.76
112839--112931	33	2.8	33	91	0	159	8	19	24	47	1.77
112834--112968	19	7.6	19	72	20	96	10	18	25	45	1.81
114887--114924	14	2.8	13	92	8	58	36	0	23	39	1.55
115026--115127	19	5.6	19	84	13	151	44	17	23	14	1.86
115156--115448	19	16.4	19	83	14	401	13	21	17	47	1.83
117904--118113	20	10.5	20	85	2	215	20	17	25	37	1.94
118080--118177	20	4.8	20	77	3	79	21	18	23	36	1.95
118080--118236	41	3.9	41	70	14	110	18	17	25	38	1.93
119105--119172	26	2.6	26	85	2	100	23	7	17	51	1.70
119403--119465	28	2.2	28	88	0	90	26	23	26	22	2.00
120019--120387	20	18.5	20	84	5	451	34	26	18	20	1.96
120475--120514	22	1.9	21	90	10	64	25	40	7	27	1.82
121070--121116	24	2.0	24	87	8	69	25	14	21	38	1.92
121291--121315	12	2.1	12	100	0	50	72	0	28	0	0.86
123594--123886	19	16.4	19	83	14	392	47	18	20	14	1.83
123622--123908	52	5.4	55	90	8	356	46	17	21	14	1.83
123594--123908	128	2.6	128	88	7	462	46	18	20	14	1.83
123915--124016	19	5.6	19	85	12	151	14	23	17	44	1.86
124123--124159	14	2.6	14	91	0	65	45	21	0	32	1.52
124225--124260	12	3.0	12	83	0	54	63	16	0	19	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126110--126166	14	3.7	14	77	20	60	45	22	21	10	1.82
126091--126183	33	2.8	33	95	0	168	47	21	20	10	1.80
126054--126188	19	7.6	19	76	16	128	45	23	19	11	1.82
126184--126312	19	7.3	19	75	17	125	8	17	28	45	1.77
126184--126275	33	2.8	33	93	3	150	7	18	28	45	1.76
126353--126824	93	5.1	93	97	1	903	46	18	12	22	1.82
126353--126824	185	2.6	185	98	0	917	46	18	12	22	1.82
128516--128629	33	3.5	33	92	2	203	44	21	24	9	1.82
128523--128634	14	6.8	18	73	22	95	42	22	25	9	1.84
128646--128700	14	3.6	14	73	21	56	9	25	23	41	1.83

Tables:   1   2