genome.fa.s3269.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003269.1 Hibiscus syriacus cultivar Beakdansim tig00006871_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54372

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4227--4309	21	3.9	21	78	7	78	25	36	24	14	1.93
8485--8550	33	2.0	33	90	0	105	24	46	0	28	1.52
8584--8627	21	2.1	21	86	0	61	18	31	9	40	1.81
10654--10706	24	2.2	24	83	6	63	26	7	13	52	1.66
10846--10888	20	2.3	19	88	11	63	18	16	13	51	1.77
11032--11078	20	2.3	20	86	10	69	19	17	10	53	1.72
10818--11290	181	2.6	182	90	1	716	26	16	14	42	1.87
11357--11853	230	2.2	229	95	0	904	39	8	7	45	1.62
12871--12918	23	2.1	23	88	0	69	39	10	14	35	1.80
13302--13755	180	2.5	181	91	1	750	27	16	12	43	1.84
14030--14067	20	1.9	20	100	0	76	39	18	10	31	1.85
13849--14254	201	2.0	202	97	0	769	29	17	12	40	1.86
14120--14472	112	3.2	111	91	3	566	25	15	15	44	1.85
14524--14765	111	2.2	113	86	3	328	26	14	14	44	1.83
13599--15059	606	2.4	594	85	6	1863	27	16	13	43	1.85
14818--15171	112	3.2	111	90	1	528	26	14	13	44	1.82
14524--15465	406	2.3	403	91	2	1501	26	15	13	44	1.83
14232--15059	294	2.8	292	90	2	1320	26	15	13	44	1.84
14930--15935	294	3.4	294	93	0	1690	26	14	14	44	1.84
15224--15465	112	2.2	112	91	1	396	25	15	14	45	1.84
15518--15759	112	2.2	112	90	1	369	24	14	14	45	1.83
15630--16122	182	2.7	182	88	2	722	28	15	13	42	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15996--16458	112	4.1	112	92	0	739	25	14	14	45	1.83
18194--18227	17	2.1	16	88	5	50	17	20	32	29	1.96
19986--20037	20	2.6	20	81	0	59	36	17	21	25	1.94
21434--21610	44	4.0	44	91	0	273	41	11	21	24	1.87
28386--28737	44	8.0	44	85	1	447	41	11	21	26	1.87
28386--28722	175	1.9	175	86	3	482	41	11	20	26	1.86
31414--31453	16	2.6	16	92	4	64	52	0	7	40	1.30
32312--32367	29	1.9	29	85	0	76	33	19	10	35	1.87
32353--32410	21	2.8	21	86	0	71	25	20	13	39	1.90
36230--36289	23	2.7	23	84	5	70	21	25	31	21	1.98
38771--38951	89	2.0	90	97	1	346	39	18	12	30	1.87
43743--43843	23	4.5	22	68	23	59	24	2	18	53	1.59
44336--44401	21	3.1	21	86	0	96	31	24	16	27	1.96
48078--48117	20	2.0	20	85	0	53	25	35	0	40	1.56
48127--48176	16	3.2	16	78	21	61	32	0	2	66	1.03
48129--48190	21	3.0	21	86	9	74	32	0	1	66	1.02
48129--48190	12	5.6	12	70	18	53	32	0	1	66	1.02
53820--53847	14	2.0	14	100	0	56	50	7	7	35	1.57

Tables:   1

The End!