Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000327.1 Hibiscus syriacus cultivar Beakdansim tig00000610_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68161

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4682--4764
3
27.7
3
70
18
57
65
2
2
30
1.18
5682--5710
2
14.5
2
100
0
58
51
0
0
48
1.00
5898--6067
17
10.4
17
71
16
103
38
8
5
46
1.59
5898--6079
48
3.8
48
80
11
228
39
8
6
45
1.60
5901--5983
24
3.3
26
68
20
77
39
8
6
45
1.59
6049--6130
26
2.9
29
77
16
93
43
7
6
42
1.57
5898--6168
145
1.9
144
79
11
304
40
8
6
44
1.59
6164--6220
2
29.0
2
96
3
107
49
0
0
50
1.00
6571--6601
11
2.8
11
100
0
62
25
9
0
64
1.24
7586--7686
50
2.0
50
94
0
175
34
18
11
34
1.88
10437--10471
11
3.2
11
100
0
70
42
8
0
48
1.33
12468--12521
22
2.6
21
82
11
67
42
37
0
20
1.52
13590--13616
12
2.2
12
100
0
54
22
7
0
70
1.12
13968--14002
16
2.2
16
90
10
54
34
0
0
65
0.93
17090--17119
15
2.0
15
100
0
60
6
40
20
33
1.78
25415--25620
45
4.6
45
88
1
306
21
23
11
43
1.85
25498--25567
21
3.2
21
68
18
61
21
22
8
47
1.78
25714--25889
56
3.1
56
87
0
262
32
18
11
36
1.87
26316--26364
19
2.5
19
87
9
64
26
26
12
34
1.92
29428--29456
14
2.0
15
93
6
51
68
0
0
31
0.89
29743--29771
2
14.5
2
100
0
58
51
0
0
48
1.00
31828--31872
23
1.9
23
82
13
56
15
26
6
51
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31812--32933
113
9.9
111
87
3
1537
28
19
14
37
1.91
31806--32933
340
3.3
335
87
3
1600
28
19
14
37
1.91
31812--32925
453
2.5
453
96
1
2011
28
19
14
37
1.91
33343--33395
22
2.4
22
84
6
72
37
13
13
35
1.83
33767--33896
50
2.6
50
87
2
199
28
19
15
36
1.92
34536--34608
35
2.1
34
89
2
110
32
20
12
34
1.90
35570--35834
83
3.2
83
95
1
460
36
21
13
27
1.92
37796--37930
72
1.9
72
93
0
234
34
20
20
25
1.97
42818--42846
14
2.0
15
93
6
51
68
0
0
31
0.89
43127--43155
2
14.5
2
100
0
58
51
0
0
48
1.00
46078--46111
14
2.4
14
90
5
50
52
0
0
47
1.00
52045--52095
24
2.1
24
85
0
66
58
5
1
33
1.33
53761--53789
12
2.3
13
94
5
51
58
0
0
41
0.98

Tables:   1

The End!