genome.fa.s3270.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003270.1 Hibiscus syriacus cultivar Beakdansim tig00006875_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88363

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13560--13620	30	2.0	31	87	9	90	36	6	13	44	1.69
13673--13739	19	3.5	19	85	6	82	38	11	13	35	1.82
13845--13886	21	2.0	21	95	0	75	23	21	28	26	1.99
13915--13954	20	1.9	21	85	10	55	37	37	10	15	1.80
14162--14231	34	2.1	32	84	5	86	32	14	30	22	1.94
16394--16455	31	2.0	31	87	9	92	35	6	12	45	1.68
16577--16618	21	2.0	21	85	0	57	23	21	28	26	1.99
16647--16686	20	1.9	21	85	10	55	37	35	10	17	1.83
16900--16969	34	2.1	32	84	5	86	31	15	28	24	1.96
25274--25383	3	36.7	3	92	0	184	34	2	0	62	1.09
26778--26840	12	5.1	12	72	14	56	42	0	1	55	1.09
26781--26852	12	5.8	12	72	8	54	41	0	1	56	1.07
37413--38104	83	8.4	83	94	0	1174	29	13	21	35	1.92
38744--39488	113	6.6	113	96	1	1268	38	12	19	29	1.88
38744--39488	225	3.3	224	95	1	1260	38	12	19	29	1.88
38725--39488	338	2.3	338	92	2	1284	38	12	19	29	1.89
39742--39842	3	33.7	3	91	0	166	34	2	0	62	1.11
41232--41257	12	2.2	12	100	0	52	38	0	0	61	0.96
41219--41290	34	2.2	33	85	7	92	38	0	1	59	1.06
48487--48566	30	2.6	30	86	4	97	11	12	60	16	1.60
48482--48565	15	5.5	15	69	10	53	10	13	61	14	1.56
48902--48936	14	2.4	15	90	4	54	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51370--51423	24	2.2	24	93	0	99	46	9	37	7	1.64
53792--53845	24	2.2	24	93	0	99	46	9	37	7	1.64
58914--58961	24	2.0	24	91	0	78	43	10	35	10	1.73
60000--60043	16	2.8	16	96	0	79	40	25	15	18	1.90
60157--60204	21	2.2	23	82	14	66	60	0	8	31	1.26
63847--63896	24	2.1	24	85	7	66	60	16	2	22	1.46
74210--74259	24	2.1	24	85	7	66	60	16	2	22	1.46
75761--75792	16	2.0	16	100	0	64	18	12	25	43	1.85
75871--75919	23	2.2	23	85	3	64	57	2	10	30	1.43
79652--79692	21	2.0	21	85	0	55	34	9	2	53	1.47
81222--81285	20	3.2	20	77	4	65	20	25	14	40	1.89
83664--83744	13	5.6	13	73	21	72	45	4	17	32	1.69
83677--83753	13	5.0	17	70	23	80	42	7	16	32	1.77
83663--83753	30	3.0	30	100	0	182	43	6	16	32	1.74

Tables:   1

The End!