Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003271.1 Hibiscus syriacus cultivar Beakdansim tig00006876_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67717

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3172--3208
19
1.9
19
100
0
74
48
0
2
48
1.15
3279--3333
19
2.8
19
97
2
101
61
0
0
38
0.96
12243--12288
22
2.1
22
87
0
65
43
13
23
19
1.86
25499--25543
21
2.1
21
100
0
90
53
8
8
28
1.62
29014--29049
18
2.0
18
88
0
54
27
11
11
50
1.72
30040--30064
6
4.2
6
100
0
50
36
32
0
32
1.58
30061--30141
6
13.5
6
97
0
153
33
49
16
1
1.53
30142--30173
5
6.4
5
100
0
64
37
21
40
0
1.54
36267--36336
34
2.1
32
84
5
86
20
28
17
34
1.95
36619--36660
21
2.0
21
95
0
75
26
28
21
23
1.99
36745--36803
21
2.8
21
87
5
84
16
28
35
18
1.93
38732--38781
3
17.0
3
78
12
50
2
30
2
66
1.14
39757--39826
34
2.1
32
86
5
95
21
28
15
34
1.94
40041--40080
21
1.9
22
90
10
66
15
10
37
37
1.80
40109--40150
21
2.0
21
95
0
75
26
28
21
23
1.99
40186--40228
21
2.0
21
100
0
86
13
27
44
13
1.83
40254--40316
21
3.0
21
92
0
108
12
28
39
19
1.88
43438--43571
66
2.0
66
100
0
268
43
5
11
38
1.66
46716--46783
23
2.7
25
72
25
63
36
1
2
58
1.22
47210--47253
20
2.2
20
87
0
61
31
4
0
63
1.14
50170--50496
164
2.0
161
96
2
602
38
15
23
22
1.92
59017--59077
18
3.4
18
72
20
56
42
0
4
52
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59017--59077
17
3.4
17
74
12
59
42
0
4
52
1.23
58980--59097
37
3.2
37
81
11
125
46
3
5
44
1.42
66910--66951
18
2.4
17
84
7
57
71
4
4
19
1.22

Tables:   1

The End!