genome.fa.s3272.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003272.1 Hibiscus syriacus cultivar Beakdansim tig00006877_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58950

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3646--3735	1	90.0	1	77	0	90	88	0	11	0	0.50
3643--3732	8	11.2	8	85	12	123	87	0	12	0	0.54
3646--3739	41	2.3	41	92	5	154	88	0	11	0	0.52
4878--5095	83	2.6	83	99	0	427	27	12	21	38	1.89
5051--5255	115	1.8	115	92	2	324	32	14	21	31	1.93
5932--6605	113	6.0	111	88	4	931	35	14	19	30	1.92
5932--6605	229	3.0	224	88	4	989	35	14	19	30	1.92
6829--6913	3	28.0	3	90	2	116	40	0	0	60	0.97
8177--8235	27	2.2	26	84	6	73	42	1	0	55	1.09
10428--10509	21	3.9	21	75	19	80	28	20	20	30	1.98
10391--10494	44	2.4	44	91	1	165	28	22	20	28	1.98
10968--11006	13	2.9	13	92	3	60	35	12	7	43	1.72
13083--13235	65	2.4	65	85	5	204	29	20	18	32	1.96
14285--14322	19	2.0	20	89	5	60	36	10	15	36	1.82
15803--16404	182	3.3	182	88	2	877	42	13	16	28	1.85
18469--18508	9	4.4	9	90	0	53	30	5	57	7	1.48
18463--18508	18	2.6	18	85	0	65	30	6	56	6	1.50
18922--19233	128	2.4	127	79	9	350	44	10	14	31	1.79
18922--19271	128	2.7	126	76	11	345	42	10	14	32	1.79
19109--20672	199	7.8	199	88	2	2099	39	14	15	30	1.87
19109--20633	596	2.6	594	86	2	2166	40	14	15	30	1.87
21284--21319	2	18.0	2	100	0	72	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25060--26708	199	8.2	199	87	4	2206	39	14	14	31	1.86
26098--26150	20	2.7	20	87	0	70	41	9	15	33	1.79
25899--26351	219	2.1	219	91	0	717	39	13	15	32	1.85
26845--26894	23	2.2	23	82	7	57	36	10	10	44	1.72
26925--26972	23	2.1	23	92	0	78	31	8	8	52	1.61
26824--26993	87	2.0	85	83	4	216	35	7	8	48	1.63
26930--26981	23	2.3	22	83	9	68	34	7	7	50	1.60
30809--30858	24	2.0	24	96	3	91	44	0	0	56	0.99
33157--33202	24	2.0	24	83	12	60	45	2	4	47	1.34
34142--34288	41	3.6	42	79	10	153	31	17	19	31	1.95
34142--34295	82	1.9	82	90	2	247	32	16	18	32	1.93
34144--34312	82	2.1	82	86	2	232	31	16	17	33	1.93
37303--37345	19	2.1	20	83	12	52	27	11	4	55	1.55
38476--38855	43	8.9	43	91	1	593	25	28	18	27	1.98
38476--38855	170	2.2	171	90	0	600	25	28	18	27	1.98
41833--41891	18	3.3	18	83	11	77	49	6	0	44	1.29
41847--41990	18	8.1	18	70	17	70	48	4	2	43	1.38
41832--42030	91	2.2	92	86	9	282	47	5	4	43	1.44
41924--41973	17	2.9	17	82	5	64	54	2	0	44	1.11
42079--42144	2	34.0	2	73	22	52	50	1	6	42	1.36
42656--42709	16	3.3	16	80	17	58	77	12	0	9	0.98
44527--45751	407	3.0	407	87	2	1611	25	20	24	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44554--45751	328	3.7	327	85	2	1507	25	20	24	29	1.99
51839--51878	19	2.1	19	85	0	53	50	10	5	35	1.58
52236--52333	40	2.4	41	78	11	119	40	7	12	39	1.70
52259--52322	20	3.2	20	66	24	53	45	7	9	37	1.66
52360--52385	2	13.0	2	100	0	52	50	0	0	50	1.00
54033--54079	14	3.7	14	71	26	50	51	4	0	44	1.21
54024--54080	23	2.4	23	94	2	96	47	3	0	49	1.18
54094--54156	22	2.7	22	87	9	81	42	3	0	53	1.16
54330--54380	16	3.3	15	84	10	66	43	13	23	19	1.87
54342--54383	16	2.6	16	92	0	75	42	14	26	16	1.86

Tables:   1

The End!