genome.fa.s3274.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003274.1 Hibiscus syriacus cultivar Beakdansim tig00006885_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66043

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6233--6363	60	2.2	61	87	6	187	32	22	12	32	1.92
12186--12227	22	2.0	21	85	4	57	35	0	0	64	0.94
12415--12489	36	2.1	35	81	18	84	46	2	1	49	1.24
23677--23840	35	4.6	35	86	6	199	39	18	21	19	1.92
23676--23840	71	2.3	71	84	9	221	40	18	21	19	1.92
24026--24058	16	2.1	16	94	0	57	45	0	0	54	0.99
24023--24078	27	2.1	27	83	6	69	44	0	0	55	0.99
26575--26615	12	3.3	12	86	3	55	36	0	14	48	1.44
26573--26615	16	2.6	16	85	3	59	34	0	16	48	1.46
30879--30960	37	2.2	37	97	0	155	53	8	8	29	1.61
31565--32223	56	11.8	56	80	5	636	36	11	14	38	1.82
31565--32223	112	5.9	112	81	5	708	36	11	14	38	1.82
31565--32223	168	3.9	166	81	7	706	36	11	14	38	1.82
37511--37594	40	2.1	40	95	0	150	25	15	25	34	1.95
48947--48991	19	2.4	19	88	0	63	26	24	20	28	1.99
48957--48994	19	2.0	19	100	0	76	26	21	15	36	1.93
53211--53261	20	2.6	19	93	3	84	21	17	29	31	1.96
53291--53328	20	1.9	20	88	0	58	21	15	31	31	1.94
53166--53328	84	1.9	85	86	6	233	30	14	23	31	1.94
55385--55448	21	3.2	20	84	8	85	17	21	25	35	1.95
56395--56608	56	3.8	56	80	4	227	33	9	18	37	1.84
56406--56607	111	1.8	112	81	7	259	33	9	18	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56476--56762	149	1.9	149	82	3	362	37	10	15	36	1.82
56625--57131	56	9.2	56	79	6	502	37	9	13	39	1.78
56389--56875	262	1.9	261	82	5	626	35	9	16	38	1.81
56625--57124	168	3.0	167	83	6	592	37	9	13	39	1.78
56883--57072	103	1.8	104	88	3	294	36	9	13	40	1.77
57125--57268	56	2.6	56	85	4	184	40	15	11	32	1.83
57340--57445	54	1.9	55	88	1	160	37	18	8	34	1.82
60575--60690	45	2.5	44	83	4	124	31	18	12	37	1.88
60614--60791	45	4.0	45	83	8	197	27	20	12	39	1.89
60614--60791	90	2.0	90	82	9	224	27	20	12	39	1.89
61214--61256	18	2.3	19	84	8	61	32	25	11	30	1.91

Tables:   1

The End!