genome.fa.s3276.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003276.1 Hibiscus syriacus cultivar Beakdansim tig00006888_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96782

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3010--3034	12	2.1	12	100	0	50	24	16	44	16	1.86
6170--6221	15	3.5	15	70	19	54	69	1	1	26	1.10
8691--8730	2	20.0	2	100	0	80	50	0	0	50	1.00
8801--8842	2	21.5	2	95	4	77	50	0	0	50	1.00
8788--8835	19	2.5	19	86	0	51	50	2	0	47	1.12
9071--9267	21	9.6	20	75	17	115	34	20	21	23	1.97
9091--9224	41	3.3	41	92	3	218	35	19	22	23	1.96
9152--9285	61	2.2	61	97	0	250	36	17	21	23	1.95
9085--9292	102	2.0	102	92	3	348	34	18	22	24	1.96
9214--9306	41	2.3	41	88	9	145	32	18	23	25	1.97
9951--9988	6	6.5	6	90	3	60	2	15	50	31	1.58
10077--10134	21	2.8	21	75	14	57	32	15	22	29	1.95
10120--10201	13	6.2	13	71	18	62	31	20	23	24	1.98
10139--10225	20	4.7	20	67	25	73	35	19	21	22	1.96
10102--10242	54	2.6	54	98	0	273	33	19	21	24	1.97
10187--10266	21	3.9	21	83	6	101	30	22	22	25	1.99
10275--10400	21	6.6	20	81	14	110	21	21	26	30	1.98
10315--10362	15	3.2	15	100	0	96	20	18	27	33	1.96
10774--10819	23	2.0	24	82	4	58	60	0	4	34	1.16
10797--11106	100	3.1	100	89	1	440	44	9	10	35	1.71
16753--16808	21	2.5	22	80	11	60	23	3	1	71	1.11
16776--16809	12	2.8	12	86	0	50	26	2	0	70	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17514--17621	35	3.2	34	81	13	100	34	0	3	62	1.13
17763--17816	17	3.2	17	72	0	54	31	0	3	64	1.11
19346--19393	21	2.3	21	85	0	60	25	39	12	22	1.89
19397--19469	21	3.5	21	85	7	103	17	32	27	21	1.96
19384--19478	42	2.3	41	78	8	102	20	30	22	27	1.98
19992--20089	34	2.9	34	89	0	142	55	4	4	36	1.38
20490--20728	125	1.9	123	94	5	417	32	19	24	23	1.98
20799--20839	8	5.2	8	82	5	57	36	29	0	34	1.58
23740--23786	23	2.0	24	84	12	62	29	2	8	59	1.39
26073--26111	20	2.0	20	85	10	53	33	7	2	56	1.41
26094--26126	13	2.6	13	90	4	50	33	3	0	63	1.10
32124--32168	23	2.0	23	95	0	81	26	13	33	26	1.93
32137--32191	15	3.6	15	79	13	67	32	12	29	25	1.93
32130--32204	31	2.4	31	93	0	132	32	13	29	25	1.93
32183--32360	60	3.0	60	94	1	313	25	16	26	30	1.97
36038--36096	29	2.0	29	100	0	118	23	13	13	49	1.78
40714--40772	29	2.0	29	100	0	118	23	13	13	49	1.78
46771--46806	18	1.9	19	88	5	56	50	8	2	38	1.47
52548--52578	15	2.1	15	93	0	53	54	0	0	45	0.99
56355--56397	21	2.0	21	90	0	68	32	27	23	16	1.96
56425--56461	19	1.9	19	88	0	56	24	35	29	10	1.89
56940--57260	103	3.1	103	95	0	588	26	13	23	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57276--57339	23	2.8	23	75	13	69	21	25	25	28	1.99
63380--63420	21	2.0	21	90	0	64	31	29	21	17	1.96
63966--64286	103	3.1	103	95	0	579	25	13	24	36	1.92
64303--64365	23	2.7	23	80	4	74	20	25	25	28	1.99
65250--65296	21	2.2	21	80	0	58	23	21	19	36	1.95
65310--65586	41	6.8	41	94	0	482	37	25	16	20	1.93
66036--66144	19	5.4	19	78	13	101	32	27	5	34	1.80
68206--68396	96	2.0	96	91	0	310	32	18	17	30	1.95
69787--70246	116	3.8	118	82	6	471	32	25	18	23	1.97
69786--70246	124	3.8	118	83	5	507	32	25	18	23	1.97
70327--70551	80	2.9	77	78	12	237	31	23	19	26	1.98
71181--71240	29	2.1	28	81	6	68	38	6	10	45	1.64
71192--71246	29	2.0	29	85	7	78	41	5	7	45	1.55
71223--71289	35	1.9	34	88	8	100	44	2	7	44	1.47
71358--71417	24	2.5	23	74	12	59	41	5	5	48	1.47
71467--71530	3	21.3	3	75	12	60	35	0	3	60	1.12
71467--71510	16	2.8	16	93	6	72	34	0	4	61	1.16
72712--72760	21	2.3	20	86	6	62	22	4	0	73	1.00
73780--73818	19	2.1	19	90	0	60	43	0	7	48	1.31
73740--73853	60	1.9	60	88	0	174	41	5	7	46	1.53
75868--75910	14	2.9	15	90	10	63	32	0	0	67	0.91
76743--76794	23	2.3	23	93	0	86	19	13	15	51	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77344--77483	20	6.9	20	72	8	77	32	23	14	29	1.94
77342--77475	61	2.2	61	84	7	166	34	24	13	27	1.93
77340--77543	81	2.5	81	78	7	193	33	23	12	30	1.91
77387--77542	40	3.9	40	71	4	125	33	24	12	30	1.92
77506--77596	40	2.3	40	80	0	110	29	20	12	37	1.89
78514--78581	24	2.8	24	90	0	91	25	16	19	39	1.91
80627--80759	21	6.3	21	75	6	99	25	16	35	22	1.95
80893--80926	4	8.5	4	93	0	59	73	0	0	26	0.83
81043--81225	21	8.7	20	70	12	100	33	34	12	19	1.88
81050--81216	63	2.6	62	75	7	176	34	35	11	18	1.88
81325--81429	42	2.5	42	93	1	176	20	18	35	26	1.95
83550--83599	20	2.5	20	93	0	82	48	14	14	24	1.80
83552--83612	20	3.1	20	85	2	70	44	14	14	26	1.84
83714--83759	20	2.3	20	84	0	56	19	8	28	43	1.80
90737--90868	70	1.9	70	88	0	201	30	31	13	25	1.94
92250--92366	60	2.0	60	83	6	148	35	7	12	44	1.71
93965--94010	2	23.0	2	90	0	74	45	0	4	50	1.21

Tables:   1

The End!