genome.fa.s3278.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003278.1 Hibiscus syriacus cultivar Beakdansim tig00006893_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90429

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10273--10328	25	2.2	26	80	3	60	44	7	1	46	1.41
11585--11754	89	1.9	88	89	3	261	31	22	17	28	1.96
13276--13310	17	2.1	17	88	0	52	71	8	2	17	1.23
14464--14503	19	2.2	18	90	4	62	15	27	27	30	1.96
14464--14503	9	4.3	9	90	6	62	15	27	27	30	1.96
14507--14575	22	3.0	22	85	4	75	18	44	24	11	1.83
14534--14568	17	2.1	17	100	0	70	17	48	22	11	1.79
21739--21795	20	2.8	19	84	10	69	19	26	24	29	1.98
21796--21835	17	2.4	17	95	0	71	17	50	22	10	1.76
25199--25297	44	2.3	44	82	6	132	47	0	1	51	1.07
25372--25446	30	2.5	30	91	0	123	20	36	10	33	1.87
25690--25751	30	2.1	30	90	0	97	30	11	11	46	1.75
25927--26046	30	4.0	30	74	11	93	39	4	0	55	1.25
26048--26092	19	2.4	19	88	7	65	46	2	0	51	1.13
26043--26090	19	2.7	17	79	17	53	47	2	0	50	1.12
29315--29376	19	3.3	19	78	15	58	37	1	0	61	1.06
31538--31584	21	2.2	21	84	0	58	44	2	8	44	1.46
33574--33752	56	3.2	56	79	3	182	41	10	15	32	1.80
34336--34379	20	2.1	21	84	12	56	27	9	2	61	1.38
41447--41557	31	3.5	31	70	13	109	13	12	38	35	1.83
41443--41585	64	2.2	64	98	0	277	14	11	36	37	1.82
41478--41583	33	3.3	33	68	15	103	14	11	36	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41759--41844	38	2.3	37	82	6	111	13	10	36	39	1.80
41546--42138	259	2.4	248	88	7	848	25	11	26	36	1.90
43459--43495	20	1.9	19	89	10	58	45	10	24	18	1.81
47006--47135	30	4.4	29	84	9	176	56	0	5	37	1.28
47007--47134	57	2.2	59	87	8	183	56	0	5	37	1.28
47139--47186	18	2.7	18	83	0	69	47	0	6	45	1.27
58235--58280	18	2.4	19	85	14	67	28	0	0	71	0.86
59674--59705	14	2.3	14	100	0	64	34	37	12	15	1.85
62867--62891	9	2.8	9	100	0	50	32	12	0	56	1.36
70847--70882	12	3.0	12	100	0	72	25	16	41	16	1.89
74072--74123	15	3.5	15	70	19	54	69	1	1	26	1.10
76716--76760	2	22.5	2	100	0	90	51	0	0	48	1.00
76976--77040	21	3.1	21	88	2	96	27	27	23	21	1.99
77031--77162	20	6.6	20	70	19	87	29	19	21	28	1.98
77031--77162	41	3.3	39	80	11	160	29	19	21	28	1.98
77031--77197	82	2.1	79	89	5	255	28	19	20	30	1.97
77063--77197	41	3.3	40	73	19	125	27	20	20	31	1.97
77845--77882	6	6.5	6	90	3	60	2	15	50	31	1.58
78015--78096	13	6.2	13	71	18	62	31	20	23	24	1.98
78034--78120	20	4.7	20	67	25	73	35	19	21	22	1.96
77997--78137	54	2.6	54	100	0	282	33	20	21	24	1.97
78082--78161	21	3.9	21	83	6	101	30	22	22	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78170--78278	21	5.2	21	84	11	134	22	21	25	30	1.99
78170--78278	42	2.6	42	86	11	152	22	21	25	30	1.99
78717--78951	88	2.5	98	78	16	294	44	8	9	37	1.66
84590--84645	21	2.5	22	80	11	60	23	3	1	71	1.11
84613--84646	12	2.8	12	86	0	50	26	2	0	70	1.01
85345--85451	33	3.2	34	79	13	98	33	0	3	62	1.13
85375--85452	33	2.4	33	87	6	106	37	0	1	61	1.04
85397--85432	18	1.9	19	88	5	56	36	0	2	61	1.11
85591--85644	17	3.2	17	72	0	54	31	0	3	64	1.11
87146--87193	21	2.3	21	85	0	60	25	39	12	22	1.89
87184--87269	21	4.1	21	85	8	68	18	31	23	26	1.97
87784--87873	34	2.9	30	79	12	99	56	4	2	36	1.32
87782--87880	30	3.2	29	77	16	99	55	5	2	37	1.33
87992--88018	14	1.9	14	100	0	54	51	0	3	44	1.19

Tables:   1

The End!