genome.fa.s3279.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003279.1 Hibiscus syriacus cultivar Beakdansim tig00006894_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109898

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4148--4191	18	2.4	18	100	0	88	20	25	15	38	1.92
7767--7844	34	2.3	34	93	0	138	21	14	12	51	1.75
7767--7858	34	2.6	34	87	3	121	23	13	16	46	1.82
12444--12609	65	2.6	64	78	5	174	26	18	23	31	1.97
15815--15847	16	2.0	17	94	5	59	36	6	21	36	1.78
21135--21186	19	2.7	19	80	16	63	65	1	0	32	1.04
21201--21294	20	4.6	20	67	21	68	57	1	0	41	1.06
21210--21315	12	8.7	12	73	18	85	58	1	0	39	1.09
21273--21323	12	4.3	12	76	18	54	66	1	0	31	1.03
21757--21812	18	3.3	18	72	27	68	39	3	8	48	1.52
21766--21817	14	3.2	17	71	17	56	42	1	7	48	1.43
23012--23066	21	2.6	21	77	8	58	34	21	20	23	1.97
23054--23246	20	9.6	20	84	5	246	34	27	19	18	1.95
23625--23695	33	2.2	33	94	0	124	11	23	16	47	1.79
23775--23847	21	3.5	20	78	12	85	46	17	20	15	1.84
23870--23920	19	2.7	19	93	0	75	11	19	21	47	1.81
23919--23983	21	3.1	21	82	4	96	10	26	15	47	1.78
23879--23981	19	5.5	20	75	16	96	11	23	18	46	1.81
25665--26073	93	4.4	93	99	0	800	22	13	19	45	1.85
26189--26245	14	3.7	14	72	20	51	43	24	22	8	1.81
26203--26294	19	5.4	18	72	24	65	46	28	17	7	1.75
26171--26294	33	3.7	33	91	1	185	45	27	17	8	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26220--26278	14	3.9	14	76	20	64	47	28	16	6	1.72
26290--26462	19	9.6	19	76	12	159	10	20	23	45	1.81
26312--26368	14	3.7	14	75	20	51	10	22	22	43	1.84
26290--26462	33	4.8	38	80	8	168	10	20	23	45	1.81
28382--28408	14	1.9	14	100	0	54	40	0	22	37	1.54
28384--28417	14	2.4	14	90	0	50	38	0	17	44	1.49
28508--28595	19	4.8	19	82	14	123	47	15	22	13	1.81
28508--28614	53	2.0	52	98	1	205	45	16	24	13	1.83
28604--28860	105	2.4	107	90	7	395	13	22	17	45	1.84
28610--28846	72	3.4	70	82	11	263	13	22	17	46	1.83
28604--28860	53	4.9	52	88	9	380	13	22	17	45	1.84
31142--31166	12	2.1	12	100	0	50	0	28	0	72	0.86
31341--31387	24	2.0	24	87	8	69	38	21	14	25	1.92
32080--32308	20	11.4	20	86	1	226	19	17	25	37	1.94
32276--32373	21	4.8	20	75	10	81	21	19	21	37	1.94
32276--32374	42	2.4	43	77	11	100	21	19	22	37	1.94
36083--36109	12	2.2	12	100	0	54	55	0	7	37	1.28
36169--36224	23	2.4	24	84	3	69	76	1	7	14	1.07
38597--39397	84	9.7	84	76	5	698	24	20	25	30	1.99
38600--39379	164	4.7	162	78	6	568	24	19	25	30	1.98
38600--39385	248	3.2	248	92	0	1241	24	19	25	30	1.98
42786--42830	19	2.4	19	92	3	74	68	6	11	13	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43441--43473	17	1.9	17	93	0	57	72	9	12	6	1.26
46542--46571	3	10.0	3	92	0	51	63	0	3	33	1.11
47633--47662	15	2.0	15	93	0	51	63	23	0	13	1.29
53190--53440	125	2.0	126	94	0	441	15	19	23	41	1.90
54351--54419	3	23.0	3	100	0	138	33	0	0	66	0.92
74126--74635	59	8.6	59	94	0	878	34	11	23	30	1.91
76469--76504	15	2.4	15	90	0	63	44	8	47	0	1.33
77859--77888	12	2.5	12	100	0	60	56	0	0	43	0.99
80319--80344	5	5.2	5	100	0	52	19	0	0	80	0.71
91991--92065	36	2.1	36	94	0	132	40	21	12	26	1.88
95160--95219	22	2.9	21	81	13	70	33	16	25	25	1.96
95160--95219	21	2.8	20	79	18	68	33	16	25	25	1.96
95444--95836	59	6.7	59	91	1	635	34	11	22	30	1.90
97289--97510	117	1.9	118	90	2	358	22	21	16	39	1.92
96959--97721	321	2.4	321	87	3	1079	27	20	17	35	1.94
97406--97923	204	2.5	202	90	3	790	26	20	18	34	1.96
99293--99420	52	2.4	54	84	7	163	47	15	10	26	1.77
100776--100838	28	2.2	28	88	5	92	25	4	26	42	1.75
101514--101577	25	2.7	23	79	13	67	6	18	1	73	1.12
101562--101620	27	2.2	28	82	11	70	11	15	1	71	1.23
102985--103016	13	2.5	13	94	0	55	46	9	21	21	1.79

Tables:   1

The End!