genome.fa.s3280.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003280.1 Hibiscus syriacus cultivar Beakdansim tig00006900_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88157

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3189--3405	62	3.5	64	81	7	223	32	18	18	29	1.96
3184--3345	64	2.6	64	82	7	208	31	17	20	30	1.96
3703--3738	12	3.0	12	87	0	54	30	8	25	36	1.85
3883--3960	15	5.2	15	98	0	147	14	20	33	32	1.92
9794--10014	64	3.5	64	85	3	268	33	19	18	29	1.95
10324--10357	12	2.8	12	91	8	52	26	5	26	41	1.78
10501--10578	15	5.2	15	98	0	147	14	20	33	32	1.92
17269--17356	39	2.2	39	91	2	140	51	2	5	40	1.38
17300--17383	30	2.9	30	72	18	79	52	1	3	42	1.26
17389--17465	5	15.2	5	74	17	61	20	3	0	75	0.96
17384--17443	17	3.5	17	79	6	59	23	3	1	71	1.10
17401--17465	25	2.7	24	83	9	78	18	4	0	76	0.95
17389--17456	9	7.3	9	75	17	59	20	4	0	75	0.98
17394--17465	29	2.5	29	85	12	96	19	4	0	76	0.95
18453--18487	15	2.3	15	90	0	52	17	5	2	74	1.14
21299--21398	24	4.2	24	82	5	103	43	19	13	25	1.86
26238--26346	24	4.5	24	84	2	121	44	19	11	24	1.84
32040--32081	17	2.4	17	88	4	66	47	16	0	35	1.47
35067--35502	32	14.7	32	68	26	252	35	0	12	52	1.40
35100--35142	22	2.0	22	100	0	86	34	0	13	51	1.42
35072--35694	54	11.5	54	76	11	555	34	0	13	52	1.40
35158--35250	22	3.8	22	71	24	78	36	0	11	51	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35374--35438	22	3.0	22	95	0	121	36	0	12	50	1.40
35073--35662	188	3.1	188	88	6	818	34	0	13	52	1.40
35427--35480	14	3.6	14	72	18	54	37	0	5	57	1.22
35441--35520	18	4.4	18	68	22	60	36	0	10	53	1.34
35553--35626	22	3.2	23	76	14	71	28	0	17	54	1.44
35396--35679	80	3.5	79	90	5	426	33	0	13	53	1.40
35642--35684	22	2.0	22	100	0	86	34	0	13	51	1.42
35709--35767	31	1.9	31	89	0	91	44	10	5	40	1.60
38463--38593	3	43.7	3	83	6	167	35	5	0	59	1.20
38466--38593	45	2.8	45	98	0	247	35	5	0	59	1.21
40028--40067	12	3.1	13	82	10	55	40	0	0	60	0.97
51410--51444	14	2.5	14	86	13	54	85	0	14	0	0.59
51775--51821	16	2.7	18	90	9	71	31	6	8	53	1.57
52592--53213	82	7.5	82	97	0	1163	29	13	21	35	1.92
52592--53213	165	3.8	165	98	0	1174	29	13	21	35	1.92
53946--54617	113	6.0	113	97	0	1215	37	13	18	30	1.89
54938--55110	3	57.7	3	83	4	224	35	5	0	59	1.20
55537--55595	20	2.9	20	71	19	59	66	13	20	0	1.25
56547--56586	12	3.1	13	82	10	55	40	0	0	60	0.97
58530--58605	24	3.2	24	80	0	89	51	17	10	21	1.74
58574--58655	36	2.3	36	87	4	112	56	15	10	17	1.67
68873--68925	3	17.0	3	92	7	88	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71793--71852	30	2.0	31	83	3	77	55	10	8	26	1.61
74257--74283	5	5.4	5	100	0	54	0	18	0	81	0.69
75985--76026	20	2.1	20	82	8	50	61	9	4	23	1.45
76428--76479	23	2.2	25	86	6	72	65	0	7	26	1.20
81694--81744	14	3.8	13	80	10	50	0	19	1	78	0.85
81693--81737	17	2.7	16	83	10	63	0	20	2	77	0.87
82016--82067	23	2.2	25	86	6	72	65	0	7	26	1.20

Tables:   1

The End!