genome.fa.s3281.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003281.1 Hibiscus syriacus cultivar Beakdansim tig00006906_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118994

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
333--398	28	2.4	28	80	10	80	43	9	3	43	1.51
5429--5459	2	15.5	2	100	0	62	51	0	0	48	1.00
6228--6257	15	2.0	15	100	0	60	46	13	13	26	1.80
7534--7595	21	2.8	23	76	9	58	19	19	24	37	1.94
7534--7595	23	2.8	23	74	13	58	19	19	24	37	1.94
8523--8606	25	3.4	25	96	0	150	39	10	3	46	1.56
10601--11796	81	14.9	81	85	1	1503	28	24	11	35	1.90
10867--11094	72	3.0	72	78	10	222	28	25	10	35	1.89
11995--12142	54	2.7	54	78	7	158	36	18	12	32	1.89
11995--12142	55	2.7	54	78	11	160	36	18	12	32	1.89
12484--12554	19	3.6	19	80	10	79	26	28	15	29	1.96
12499--12553	19	2.6	22	80	16	80	27	23	16	32	1.96
12575--12647	20	3.7	20	88	3	94	20	28	16	34	1.94
12859--12911	20	2.7	20	93	0	88	45	15	1	37	1.57
15366--15413	20	2.4	19	86	10	69	56	8	16	18	1.65
15156--15624	181	2.6	181	88	3	669	42	13	17	26	1.86
17778--17842	21	3.1	21	93	0	103	41	10	30	16	1.83
17876--17940	33	2.0	32	87	3	94	29	0	49	21	1.50
19724--19769	18	2.5	18	92	3	74	28	2	10	58	1.43
19888--20893	200	5.0	200	97	0	1863	36	15	17	30	1.91
22746--23238	183	2.7	183	95	1	891	33	15	18	32	1.92
24777--24849	23	3.2	23	88	0	101	34	4	21	39	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25206--25277	23	3.2	22	86	4	90	34	4	20	40	1.72
25634--25706	23	3.2	23	88	0	101	34	4	21	39	1.73
24575--26907	428	5.4	430	97	0	4412	40	7	12	39	1.71
26062--26134	23	3.2	23	88	0	101	34	4	21	39	1.73
24575--26912	857	2.7	855	97	0	4401	40	7	12	39	1.71
26492--26564	23	3.2	23	88	0	101	34	4	21	39	1.73
27966--28022	27	2.1	28	87	9	82	50	21	0	28	1.48
31608--31725	49	2.5	46	75	9	114	27	21	7	44	1.79
31785--36944	81	63.8	81	85	1	6228	29	23	11	35	1.90
37145--37305	55	2.9	54	83	2	205	34	21	13	31	1.91
37841--37936	44	2.2	44	86	1	140	31	16	15	36	1.90
48226--48374	40	3.8	40	83	4	194	36	26	12	24	1.91
48226--48374	80	1.9	79	88	4	228	36	26	12	24	1.91
48693--48740	24	2.0	24	95	0	87	41	14	12	31	1.83
56997--57058	22	2.8	22	87	0	88	29	25	20	24	1.99
61025--61076	24	2.1	25	85	3	70	26	0	25	48	1.52
62501--62553	20	2.7	20	82	11	72	22	32	15	30	1.94
63799--63849	20	2.5	20	93	0	93	25	0	33	41	1.56
66924--66973	21	2.3	22	86	10	68	50	0	0	50	1.00
67100--67184	44	1.9	45	87	2	127	32	20	4	42	1.72
67687--67733	13	3.6	13	100	0	94	40	25	6	27	1.80
69557--69603	20	2.3	20	96	0	85	38	29	0	31	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69936--69998	3	20.0	3	75	15	56	33	3	0	63	1.10
69937--69973	19	1.9	19	94	0	65	35	2	0	62	1.10
69944--69999	22	2.5	22	80	13	71	33	5	0	60	1.19
72335--72456	40	3.0	40	95	0	217	25	15	26	32	1.95
72600--72672	24	3.2	24	62	18	64	35	9	21	32	1.86
72561--72694	45	3.0	45	86	8	175	38	8	20	32	1.82
74572--74599	13	2.2	13	100	0	56	28	7	28	35	1.84
79716--79837	40	3.0	40	91	0	190	23	17	26	32	1.96
79942--80052	45	2.5	44	78	5	134	40	8	20	30	1.82
81936--81963	13	2.2	13	100	0	56	28	7	28	35	1.84
87073--87234	40	4.1	40	91	0	261	23	16	26	33	1.95
87378--87450	24	3.2	24	66	18	73	35	9	20	34	1.85
87339--87472	45	3.0	45	83	8	175	39	8	19	32	1.81
88485--88525	20	2.0	20	95	0	73	41	7	51	0	1.30
89689--89717	15	1.9	15	100	0	58	34	3	0	62	1.12
96712--96768	26	2.2	26	81	6	62	19	22	0	57	1.40
98403--98436	16	2.1	16	94	0	59	23	11	11	52	1.70
98451--98483	12	2.8	12	90	4	50	24	9	18	48	1.76
111604--111645	19	2.2	19	83	8	50	19	4	19	57	1.58
112764--112911	67	2.2	66	83	9	176	65	1	8	24	1.29

Tables:   1

The End!