Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003282.1 Hibiscus syriacus cultivar Beakdansim tig00006909_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82712

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5855--5944
27
2.9
33
75
24
115
23
4
25
46
1.71
6098--6130
10
3.3
10
95
0
57
36
18
6
39
1.75
6094--6136
10
4.5
10
88
5
54
44
16
4
34
1.68
11114--11188
35
2.1
35
85
4
98
33
9
9
48
1.68
16306--16401
46
2.1
46
92
0
156
32
20
17
29
1.96
17220--17269
24
2.1
24
85
7
66
20
4
16
60
1.52
23793--23818
13
2.0
13
100
0
52
15
0
0
84
0.62
24126--24168
20
2.1
21
87
8
63
13
16
0
69
1.19
27463--27512
24
2.1
24
85
7
66
22
2
16
60
1.46
29397--29441
14
3.2
14
80
0
54
15
28
11
44
1.81
32359--32405
12
3.8
12
86
11
60
85
0
10
4
0.74
32359--32405
24
2.0
24
87
8
69
85
0
10
4
0.74
32369--32398
11
2.7
11
100
0
60
93
0
6
0
0.35
34445--34482
20
1.9
20
88
0
58
21
26
10
42
1.85
35620--35693
32
2.3
32
95
0
130
27
17
39
16
1.91
37401--37741
57
6.0
57
88
4
512
34
21
11
33
1.89
43290--43427
57
2.4
57
90
0
222
34
21
10
34
1.87
47531--47555
12
2.1
12
100
0
50
32
16
0
52
1.44
48745--48774
13
2.4
12
89
10
51
73
0
26
0
0.84
50987--51063
31
2.5
31
82
4
84
18
14
31
36
1.90
59421--59531
48
2.3
48
83
6
118
23
13
15
47
1.80
59463--59527
12
5.4
12
74
7
60
18
10
18
52
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59459--59531
24
3.0
24
87
0
110
21
9
17
50
1.74
60096--60148
26
2.0
27
82
10
65
28
7
11
52
1.64
64120--64230
48
2.3
48
84
9
138
22
12
13
51
1.75
64158--64230
24
3.0
24
70
7
76
21
10
13
53
1.71
65329--65385
18
3.2
18
89
0
87
22
49
17
10
1.77
65374--65407
15
2.3
15
94
0
59
17
35
23
23
1.95
66718--66753
18
2.0
18
88
0
54
52
0
16
30
1.44
67908--68002
24
4.0
24
84
0
118
18
14
17
48
1.81
67931--68000
12
5.8
12
81
6
79
14
15
18
51
1.77
67894--68002
48
2.3
48
85
3
139
18
16
17
47
1.83
68353--69170
425
1.9
423
88
2
1219
26
16
20
36
1.93
72949--72991
15
2.9
15
100
0
86
60
0
4
34
1.17
75715--75739
13
1.9
13
100
0
50
72
4
0
24
1.02
75704--75742
16
2.3
18
91
8
64
69
7
0
23
1.14
78207--78246
19
2.1
19
86
9
55
12
12
2
72
1.22
78867--78893
14
1.9
14
100
0
54
37
14
11
37
1.82
80346--80427
39
2.1
39
84
10
107
32
6
13
47
1.67

Tables:   1

The End!