genome.fa.s3283.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003283.1 Hibiscus syriacus cultivar Beakdansim tig00006911_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75747

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2186--2280	32	3.0	32	87	0	136	32	17	29	20	1.96
6389--6422	17	1.9	17	88	5	50	50	2	0	47	1.16
7466--7518	21	2.5	21	84	0	70	20	26	18	33	1.96
7508--7633	20	6.3	20	89	5	193	39	20	18	21	1.92
10959--11047	20	4.4	20	88	2	135	34	24	22	17	1.96
11143--11209	19	3.8	19	75	18	81	13	22	19	44	1.85
11148--11242	33	2.8	33	90	1	136	14	24	20	41	1.89
11344--11380	14	2.6	14	86	0	56	48	21	0	29	1.50
12741--12841	21	4.8	21	74	3	87	22	18	36	21	1.95
12749--12841	42	2.2	42	80	3	107	22	17	39	20	1.92
13322--13410	20	4.4	20	94	0	142	37	20	20	22	1.95
13322--13429	40	2.8	38	80	13	116	39	19	20	20	1.92
13455--13578	20	6.5	20	82	10	152	19	18	21	40	1.92
13439--13578	74	1.9	74	90	0	226	18	20	20	40	1.91
13439--13555	34	3.3	34	77	13	126	17	21	20	40	1.92
15462--15529	20	3.4	20	81	0	73	44	23	14	17	1.86
15575--15621	20	2.3	20	85	0	58	23	19	21	36	1.95
16212--16263	21	2.5	21	84	3	61	26	19	25	28	1.98
17098--17154	28	2.0	27	80	12	62	29	15	0	54	1.42
17549--17643	31	3.0	31	84	6	129	34	23	16	25	1.95
17545--17629	31	2.7	31	90	1	134	32	23	16	27	1.96
22108--22142	12	2.9	12	91	0	52	57	17	8	17	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28036--28166	30	4.4	30	98	0	244	32	23	20	23	1.98
28036--28191	60	2.6	60	91	1	231	33	24	19	22	1.97
28153--28276	31	3.9	32	76	11	121	31	20	17	29	1.96
38300--38400	30	3.4	30	95	0	175	32	23	19	23	1.98
38300--38425	60	2.1	61	86	1	173	34	24	19	22	1.96
38387--38510	31	3.9	32	76	11	121	31	20	17	29	1.96
43225--43355	30	4.4	30	98	0	244	32	23	20	23	1.98
43225--43380	60	2.6	60	91	1	231	33	24	19	22	1.97
43338--43468	63	2.1	62	85	5	176	31	20	19	29	1.97
43342--43465	31	3.9	32	77	11	130	31	20	18	29	1.97
54104--54135	2	16.0	2	100	0	64	50	0	0	50	1.00
57049--57197	76	1.9	77	89	1	228	31	12	22	34	1.90
67465--67597	63	2.1	62	92	1	221	21	14	30	34	1.93
71136--71183	21	2.2	23	85	7	64	43	2	2	52	1.24

Tables:   1

The End!