genome.fa.s3287.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003287.1 Hibiscus syriacus cultivar Beakdansim tig00006915_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59874

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1717--1750	16	2.1	17	94	5	61	47	5	11	35	1.65
10006--10127	60	2.0	60	80	0	136	32	17	14	35	1.90
10378--10432	29	1.9	29	85	10	78	29	10	20	40	1.86
10555--10646	39	2.4	39	79	0	103	43	5	16	34	1.71
11164--11216	3	17.0	3	83	11	54	26	0	1	71	0.96
11162--11212	21	2.5	21	90	3	77	23	0	1	74	0.92
11164--11216	12	4.2	13	83	13	67	26	0	1	71	0.96
12549--12599	19	2.6	20	90	3	77	43	23	17	15	1.88
12549--12824	20	13.6	20	76	8	137	38	19	23	18	1.93
12652--12824	40	4.2	40	79	8	195	35	18	26	20	1.95
12931--12998	6	11.5	6	95	1	111	29	54	16	0	1.42
13686--13790	6	17.5	6	100	0	210	0	16	50	33	1.45
13898--14152	20	12.6	20	79	6	138	18	22	19	39	1.92
13900--14048	40	3.7	40	85	2	190	20	24	17	36	1.94
13900--14048	60	2.4	60	82	3	190	20	24	17	36	1.94
14102--14152	19	2.6	20	90	3	77	15	17	23	43	1.88
18495--18526	15	2.1	15	94	0	55	25	18	9	46	1.79
21351--21393	21	2.0	21	81	0	50	30	30	25	13	1.94
21351--21523	67	2.6	67	87	4	233	31	27	26	15	1.95
22130--22189	23	2.6	23	97	0	111	18	26	31	23	1.97
28224--28266	21	2.0	21	81	0	50	30	30	25	13	1.94
28246--28394	66	2.3	66	91	2	237	30	28	25	14	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29005--29063	22	2.6	23	94	2	102	18	27	30	23	1.98
34842--34911	11	6.8	10	79	12	79	82	0	14	2	0.77
35597--35820	114	2.0	114	93	0	385	33	16	20	29	1.95
36551--37310	113	6.7	112	82	7	847	37	13	19	29	1.90
36512--37184	225	3.0	224	88	4	966	37	13	18	30	1.90
37097--37454	125	2.9	123	85	6	446	38	15	18	26	1.91
37355--37413	17	3.4	17	68	25	50	47	11	25	15	1.79
37660--37706	3	16.0	3	91	4	78	29	0	2	68	1.02
37655--37706	20	2.5	20	90	6	77	28	0	1	69	0.99
39229--39270	20	2.2	19	86	4	57	33	0	2	64	1.07
41149--41192	17	2.6	17	74	0	52	50	0	4	45	1.22
48768--48899	48	2.8	48	79	6	151	22	15	18	43	1.88
48800--48862	12	5.2	12	70	21	51	25	14	22	38	1.92
48785--48899	24	4.8	24	86	6	153	23	16	19	40	1.90
48836--48909	24	3.1	24	84	3	87	22	14	18	43	1.87
50321--50371	23	2.3	21	80	6	57	56	3	1	37	1.29
50556--50592	17	2.2	17	90	0	56	29	8	0	62	1.24
50578--50633	27	2.1	27	82	0	67	44	1	1	51	1.22
50754--50908	60	2.6	60	90	0	238	36	11	4	47	1.60
50754--50995	60	4.1	60	82	6	217	35	16	4	43	1.69
51111--51271	60	2.7	60	83	3	191	42	5	21	31	1.76
51105--51294	60	3.2	60	78	7	156	42	4	21	31	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53223--53266	21	2.1	21	86	0	61	36	11	2	50	1.51
53276--53334	27	2.2	27	90	0	91	45	23	16	13	1.83
54101--54137	18	2.1	18	100	0	74	27	27	10	35	1.90
56001--56101	50	2.0	50	96	0	184	39	12	12	34	1.82
58300--58366	30	2.2	30	84	5	82	29	17	32	19	1.95

Tables:   1

The End!