Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003289.1 Hibiscus syriacus cultivar Beakdansim tig00006919_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94445

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5375--5406
17
1.9
17
93
6
57
62
6
6
25
1.42
6665--6698
5
6.8
5
96
0
59
44
14
0
41
1.45
6661--6698
15
2.5
15
91
0
67
47
13
0
39
1.42
7447--7657
65
3.3
64
79
12
234
26
18
25
29
1.98
7686--7744
24
2.5
24
94
0
100
38
8
13
38
1.75
14177--14216
21
1.9
21
85
10
55
35
10
2
52
1.48
16139--16187
19
2.7
17
84
9
53
26
20
28
24
1.99
16133--16318
65
2.9
64
81
7
225
26
18
24
30
1.98
16159--16368
65
3.3
63
81
7
226
26
18
24
31
1.97
16614--16750
26
5.5
26
72
17
121
46
7
2
43
1.43
16602--16717
40
3.0
38
74
18
114
45
6
2
44
1.44
16693--16739
21
2.2
22
92
3
78
44
8
2
44
1.46
16714--16891
39
4.7
39
80
6
179
42
7
4
46
1.52
16717--16927
75
2.8
74
81
5
221
41
7
4
46
1.52
16963--17012
10
5.0
10
75
18
50
40
6
0
54
1.25
16963--16999
20
1.9
18
89
10
56
40
5
0
54
1.24
16953--17015
30
2.1
31
87
3
92
39
6
0
53
1.26
20369--20429
31
2.0
31
87
6
90
19
18
6
55
1.63
22315--22366
19
2.8
18
83
13
61
76
0
19
3
0.93
22305--22361
26
2.1
27
87
9
82
77
0
17
5
0.95
22325--22366
11
3.7
12
78
9
52
76
0
21
2
0.90
24448--24559
42
2.7
42
73
4
102
27
16
20
35
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24680--24755
20
3.7
20
70
16
57
25
22
19
32
1.97
24677--24756
42
1.9
42
84
5
108
25
22
20
32
1.98
24639--24973
168
2.0
168
87
2
485
27
21
18
32
1.96
25556--26275
136
5.3
136
84
2
705
34
16
22
27
1.95
25556--26275
272
2.6
272
82
3
781
34
16
22
27
1.95
28517--28560
15
3.0
15
80
3
54
29
9
6
54
1.58
28518--28576
29
2.1
28
84
9
75
25
6
10
57
1.56
31450--31492
18
2.4
18
92
0
68
58
30
0
11
1.34
31951--32018
10
6.4
11
80
11
79
44
1
0
54
1.09
31951--32018
21
3.2
21
87
4
91
44
1
0
54
1.09
33486--33535
21
2.3
21
82
6
55
20
20
2
58
1.50
33739--33817
29
2.7
29
78
9
81
27
12
8
50
1.70
35877--35925
20
2.3
22
89
6
75
18
24
12
44
1.84
36995--37026
2
16.0
2
93
0
55
46
0
3
50
1.17
37302--37377
8
8.3
9
73
17
68
76
0
22
1
0.86
37314--37377
4
16.8
4
76
20
66
76
0
21
1
0.87
37304--37377
17
4.6
17
81
14
95
75
0
22
1
0.88
37314--37379
25
2.6
26
88
9
100
75
0
21
3
0.93
39694--39778
42
2.0
42
86
4
118
24
21
22
31
1.98
39923--40036
42
2.7
41
77
4
104
26
22
20
30
1.98
39483--40048
226
2.5
227
90
1
868
26
22
19
31
1.97
40658--41377
136
5.3
136
87
1
823
33
16
22
27
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43201--43229
10
2.9
10
100
0
58
17
10
10
62
1.54
43646--43688
15
2.9
15
79
3
52
30
9
6
53
1.59
43647--43705
29
2.1
28
83
3
73
25
10
10
54
1.65
46050--46084
16
2.2
16
94
0
61
34
17
17
31
1.93
47108--47150
18
2.4
18
92
0
68
58
30
0
11
1.34
47607--47670
29
2.2
30
82
2
76
48
1
0
50
1.10
47609--47662
18
2.7
21
72
21
53
46
1
0
51
1.11
47631--47687
30
1.9
30
88
0
87
47
3
0
49
1.18
78389--78423
17
2.1
17
94
5
63
31
11
0
57
1.34
89922--89978
20
2.8
20
89
0
78
22
22
12
42
1.87

Tables:   1

The End!