genome.fa.s329.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000329.1 Hibiscus syriacus cultivar Beakdansim tig00000612_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110420

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1784--1842	13	4.5	13	73	0	55	30	13	13	42	1.83
1784--1842	26	2.3	26	87	0	82	30	13	13	42	1.83
3178--3227	26	1.9	26	95	0	91	30	30	6	34	1.81
3627--3659	17	1.9	17	88	11	50	6	36	0	57	1.23
10777--10844	33	2.1	32	88	2	100	23	5	29	41	1.78
20402--20562	60	2.8	58	79	11	170	30	22	6	40	1.80
22452--22518	27	2.5	27	95	0	116	47	2	14	34	1.60
25115--25139	2	12.5	2	100	0	50	48	0	0	52	1.00
26563--26773	106	2.0	106	96	0	386	43	3	8	45	1.50
35300--35415	21	5.6	21	69	10	60	32	27	18	21	1.96
35403--35575	20	8.6	20	85	5	215	34	27	19	18	1.95
35955--36025	33	2.2	33	92	0	115	12	22	16	47	1.80
36172--36236	21	3.1	21	82	4	96	10	26	15	47	1.78
36171--36234	20	3.2	20	82	4	92	12	25	15	46	1.81
37921--38236	93	3.4	93	99	0	614	22	13	18	45	1.84
38369--38427	14	3.9	14	76	20	64	47	28	16	6	1.72
38350--38443	33	2.8	33	93	0	161	47	27	17	7	1.74
38334--38443	19	6.3	19	73	20	96	46	28	16	9	1.77
38439--38488	19	2.6	19	87	3	64	14	18	24	44	1.86
38883--38968	44	2.0	44	85	0	118	20	40	16	22	1.91
40411--40446	14	2.6	14	95	0	63	33	0	22	44	1.53
40537--40624	19	4.8	19	79	14	114	48	15	21	13	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40537--40643	53	2.0	53	96	1	198	46	16	23	13	1.82
40634--40927	72	4.2	69	78	13	280	13	22	18	45	1.85
40639--40908	105	2.6	109	91	7	434	13	22	17	46	1.83
40639--40908	53	5.1	52	90	8	415	13	22	17	46	1.83
43379--43425	24	2.0	24	87	8	69	38	21	14	25	1.92
44118--44326	20	10.4	20	87	2	222	18	17	25	38	1.93
44294--44391	21	4.8	20	75	10	81	21	19	21	37	1.94
44294--44392	42	2.4	43	77	11	100	21	19	22	37	1.94
52222--52318	51	1.9	51	91	0	158	51	7	26	14	1.68
52222--52374	51	2.9	51	82	5	153	50	8	25	15	1.71
52221--52338	51	2.3	51	83	0	155	50	7	26	15	1.70
54598--54661	18	3.6	18	95	0	119	40	17	29	12	1.86
69119--69177	29	2.2	26	76	21	68	25	11	8	54	1.65
69275--69337	23	3.0	20	71	15	63	26	4	15	52	1.63
72940--73023	33	2.5	33	92	0	141	21	25	16	36	1.94
78375--78403	15	1.9	15	100	0	58	27	0	13	58	1.36
78872--78927	2	28.0	2	100	0	112	50	0	0	50	1.00
81878--81906	15	1.9	15	100	0	58	27	37	13	20	1.91
82335--82466	59	2.2	60	81	6	144	33	17	16	32	1.93
96112--96175	22	2.9	22	76	2	65	56	14	14	15	1.68
97836--97875	21	1.9	21	94	0	71	37	7	20	35	1.81
102718--102779	3	20.0	3	80	6	70	38	0	1	59	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102712--102757	15	3.1	15	84	6	58	39	0	2	58	1.10
104890--104941	20	2.6	21	76	11	56	26	7	0	65	1.20
109540--109581	17	2.3	18	84	8	50	83	2	11	2	0.84

Tables:   1

The End!