genome.fa.s3290.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003290.1 Hibiscus syriacus cultivar Beakdansim tig00006920_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73423

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2297--2357	18	3.4	17	82	13	68	22	13	0	63	1.28
2306--2358	18	2.9	18	85	2	70	20	13	0	66	1.25
3999--4036	11	3.6	11	86	10	53	78	0	10	10	0.95
8507--8539	13	2.5	13	90	9	50	84	0	15	0	0.61
10842--10943	44	2.3	44	81	9	127	28	20	16	34	1.95
10893--11268	131	2.9	131	84	3	440	31	18	17	32	1.94
11069--11177	44	2.5	44	81	0	110	34	18	18	28	1.94
11502--11607	8	12.5	8	67	15	61	76	0	17	4	1.01
11492--11607	45	2.5	46	74	19	105	75	0	18	5	1.03
11510--11607	20	4.5	21	69	16	67	75	1	18	5	1.04
11553--11608	25	2.2	25	83	3	67	75	0	17	7	1.03
11553--11607	26	2.2	25	83	3	65	76	0	18	5	0.97
13921--14223	136	2.2	137	80	5	333	29	12	14	43	1.81
17336--17411	2	39.5	2	72	12	61	52	6	0	40	1.27
18558--18663	54	2.0	54	88	0	158	31	25	22	20	1.98
20500--20589	32	2.9	31	81	3	108	48	4	2	44	1.35
20500--20589	31	2.9	32	83	3	112	48	4	2	44	1.35
20500--20613	31	3.6	31	78	4	111	46	5	3	44	1.43
21768--21897	65	2.0	63	91	2	206	58	6	10	25	1.53
21896--22063	9	17.4	9	70	22	78	47	3	3	45	1.37
21898--22058	27	5.6	27	69	18	94	45	3	3	46	1.38
21983--22033	11	4.5	11	85	4	66	50	5	3	39	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21897--22042	2	72.5	2	69	16	88	47	3	4	45	1.38
21992--22052	23	2.4	27	84	10	76	49	6	1	42	1.38
22067--22472	33	13.1	33	80	13	468	40	6	7	45	1.58
22166--22249	26	3.3	25	86	8	100	36	7	10	45	1.67
22126--22425	57	5.1	57	78	15	308	40	6	8	45	1.60
22102--22458	90	3.9	90	82	12	478	40	6	8	45	1.59
22067--22472	182	2.2	188	91	4	655	40	6	7	45	1.58
22117--22379	15	16.1	16	66	19	89	40	6	8	45	1.59
22242--22472	123	1.9	121	91	3	383	41	6	6	45	1.56
22373--22495	33	4.2	27	85	11	90	45	5	4	43	1.49
22363--22493	66	2.0	68	83	8	171	44	6	5	44	1.51
22456--22522	26	2.6	26	81	9	66	53	2	4	38	1.36
23232--23568	52	6.5	51	86	4	413	25	32	2	39	1.70
23235--23565	105	3.2	103	87	5	427	25	31	2	39	1.70
23232--23562	157	2.1	158	87	3	472	25	32	2	39	1.70
27291--27341	16	3.2	16	80	0	66	39	13	25	21	1.90
27987--28027	18	2.3	18	86	0	55	56	0	2	41	1.13
28679--28803	58	2.1	58	79	7	137	37	9	13	39	1.78
29510--29548	15	2.6	15	100	0	78	48	5	20	25	1.70
31286--31315	15	2.1	14	93	6	51	20	40	16	23	1.91
33033--33083	16	3.2	16	80	0	66	39	13	25	21	1.90
33728--33768	18	2.3	18	86	0	55	56	0	2	41	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34422--34546	58	2.1	58	79	7	137	37	9	13	39	1.78
34665--34721	27	2.0	29	83	6	73	49	12	1	36	1.51
35251--35289	15	2.6	15	100	0	78	48	5	20	25	1.70
37037--37066	15	2.1	14	93	6	51	20	40	16	23	1.91
38784--38834	16	3.2	16	80	0	66	39	13	25	21	1.90
39479--39527	17	2.7	18	81	9	55	57	2	6	34	1.35
40163--40287	58	2.1	58	79	7	137	37	9	13	39	1.78
40992--41030	15	2.6	15	100	0	78	48	5	20	25	1.70
47236--47302	22	3.1	22	85	8	93	35	26	14	22	1.93
51010--51126	3	38.7	3	81	8	121	58	2	0	38	1.12
50994--51126	21	6.2	23	75	20	119	57	2	0	40	1.11
51259--52189	151	6.2	152	95	3	1676	35	21	20	21	1.96
51259--52189	75	12.4	76	95	3	1676	35	21	20	21	1.96
62568--62618	18	2.9	17	75	16	50	72	1	0	25	0.95
64767--64900	3	44.0	3	84	3	178	60	2	0	36	1.12
67047--67389	37	9.4	36	82	7	356	46	4	7	41	1.52
67047--67320	109	2.5	109	89	4	417	46	3	7	43	1.48
67047--67389	109	3.1	108	85	7	412	46	4	7	41	1.52
67047--67338	37	8.1	36	86	5	367	46	3	7	42	1.50

Tables:   1

The End!