genome.fa.s3291.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003291.1 Hibiscus syriacus cultivar Beakdansim tig00006921_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  134134

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
857--1107	83	3.0	85	85	3	328	25	17	21	35	1.96
1299--1551	64	4.0	64	89	4	381	30	13	21	33	1.93
2126--2209	32	2.6	32	79	7	89	33	21	13	32	1.91
3248--3272	13	1.9	13	100	0	50	8	12	0	80	0.92
3250--3285	18	1.9	19	94	5	65	5	11	0	83	0.80
3258--3297	18	2.2	18	86	8	55	2	15	2	80	0.93
6137--6168	16	2.0	16	100	0	64	12	31	12	43	1.80
27957--27986	14	2.1	14	100	0	60	23	36	13	26	1.92
32060--32162	21	5.0	21	69	4	84	20	19	25	34	1.96
32061--32162	41	2.5	41	93	0	168	20	19	24	35	1.96
32096--32161	20	3.2	20	76	4	78	16	19	25	37	1.93
33069--33159	24	3.8	24	85	2	121	37	19	17	25	1.94
33069--33159	47	1.9	48	88	2	139	37	19	17	25	1.94
35638--35672	18	1.9	18	100	0	70	14	17	51	17	1.77
37754--37844	24	3.8	24	85	2	121	37	19	17	25	1.94
37754--37844	47	1.9	48	88	2	139	37	19	17	25	1.94
41216--41369	30	5.1	30	96	1	256	31	25	22	20	1.98
42874--42918	21	2.1	21	87	0	63	15	24	28	31	1.96
45814--45962	30	5.0	30	93	0	237	32	26	20	20	1.98
47378--47411	14	2.5	14	95	4	61	44	20	5	29	1.75
47495--47539	21	2.1	21	87	0	63	15	24	28	31	1.96
48573--48611	6	6.5	6	100	0	78	33	51	15	0	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49105--49180	6	13.5	6	95	4	117	0	17	53	28	1.43
49105--49176	17	4.3	17	94	5	121	0	18	54	27	1.44
49314--49430	20	5.8	20	86	2	171	40	23	23	13	1.90
58238--58325	35	2.5	34	80	12	99	54	11	7	26	1.63
58921--58955	18	1.9	18	100	0	70	22	14	28	34	1.93
60462--60683	111	2.0	111	94	0	390	45	10	8	36	1.69
60814--60868	10	5.5	11	81	14	66	40	0	25	34	1.56
60809--60864	20	2.8	20	97	0	103	42	0	26	30	1.56
60991--61116	50	2.5	50	80	12	150	21	26	35	15	1.94
60992--61088	50	1.9	50	91	4	158	22	28	32	15	1.95
70405--70473	29	2.4	28	79	16	70	72	7	13	7	1.27
82907--82939	17	1.9	17	93	0	57	45	12	6	36	1.66
83456--83493	3	12.7	3	100	0	76	34	0	0	65	0.93
84529--84742	118	1.8	119	79	7	256	36	7	7	48	1.59
86354--86410	20	3.0	20	76	5	55	19	21	8	50	1.74
90593--90755	58	2.6	63	81	11	219	36	19	15	29	1.92
90709--90905	103	1.9	103	90	0	313	41	16	14	27	1.87
91287--91850	137	4.1	137	92	0	914	33	25	16	24	1.96
92990--93243	118	2.1	118	77	9	257	36	7	6	50	1.55
99378--99416	13	3.0	13	84	0	51	17	43	17	20	1.88
112427--112553	60	2.1	61	81	5	143	35	16	17	30	1.92
116375--116453	41	2.0	40	84	2	104	27	1	7	63	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119325--119383	29	2.0	29	100	0	118	49	13	13	23	1.78
123996--124054	29	2.0	29	96	0	109	49	15	11	23	1.77
124101--124157	2	28.5	2	100	0	114	50	0	0	49	1.00
124294--124326	12	2.6	13	90	9	59	33	0	0	66	0.92
125065--125143	39	2.0	39	100	0	158	22	15	21	40	1.90
129547--129624	35	2.3	35	82	8	92	65	0	1	33	1.01
129582--129645	30	2.1	31	82	8	78	60	1	3	34	1.22
132665--132886	63	3.5	63	89	2	347	31	18	17	33	1.93
132665--132882	32	6.9	32	73	12	191	31	17	17	33	1.94

Tables:   1

The End!